LOCI Bio-Formats bug... ?

[Leon Espinosa]

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hello, It seems that there is an important bug in the imageJ loci  
plugin:

With leica confocal files ".lif" if there are more then one image or  
stack included in the ".lif" file the plugin sets the properties with  
the pixel or voxel size of the first image for ALL the images/stacks  
contained in the ".lif" file. Even if you open only one image (not the  
first one and with different pixel size) the properties of the image  
are wrong.

Maybe this concerns only ".lif" files... but my feeling is that all  
the file formats that contain multi image in one file could be  
concerned...

Thank you...


Leon Espinosa
Laboratoire des Rickettsies du Pr. RAOULT
UMR CNRS 6020
Fac. de Medecine de la Timone
27 Bd Jean Moulin
13005 Marseille

tel  [phone]
fax [phone]

portable: 06 79 25 97 40

[Melissa Linkert]

Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal Hi Leon,

Thank you very much for reporting this bug.  The latest trunk build of Bio-Formats (available at http://loci.wisc.edu/ome/formats-download.html) fixes this problem - please let us know if it does not work for you.

Regards,

-Melissa

On Fri, Jun 27, 2008 at 3:17 AM, Leon Espinosa <[hidden email]> wrote:

Hello, It seems that there is an important bug in the loci plugin:

With leica confocal files ".lif" if there are more then one image or stack included in the ".lif" file the plugin sets the properties with the pixel or voxel size of the first image for ALL the images/stacks contained in the ".lif" file. Even if you open only one image (not the first one and with different pixel size) the properties of the image are wrong.

Maybe this concerns only ".lif" files... but my feeling is that all the file formats that contain multi image in one file could be concerned...

Thank you...

Leon Espinosa
Laboratoire des Rickettsies du Pr. RAOULT
UMR CNRS 6020
Fac. de Medecine de la Timone
27 Bd Jean Moulin
13005 Marseille

tel  [phone]
fax [phone]

portable: 06 79 25 97 40