MRC-600 command

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Brotchie, Daniel Brotchie, Daniel
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MRC-600 command

Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hi,

 

Are there any retro MRC-600 users who can help me please?

 

Here in Liverpool, we are happily still using both an upright and an inverted MRC-600.

 

I would like to use the inverted system to take time lapse images of live cells and collect images from both channels. The software allow me to do this, but only to collect a half screen image from each channel. Does anyone have a self penned cmd file that allows collection of 2 full screen images over time?

 

Thanks,

 

Daniel

 

Daniel Brotchie

 

Ophthalmology

University of Liverpool

UK

 

[hidden email]

Dale Callaham Dale Callaham
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Re: MRC-600 command

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hi Daniel,

What versions of software are you using?

Dale

Brotchie, Daniel wrote:

> Search the CONFOCAL archive at
> http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
> Hi,
>
>  
>
> Are there any retro MRC-600 users who can help me please?
>
>  
>
> Here in Liverpool, we are happily still using both an upright and an
> inverted MRC-600.
>
>  
>
> I would like to use the inverted system to take time lapse images of
> live cells and collect images from both channels. The software allow me
> to do this, but only to collect a half screen image from each channel.
> Does anyone have a self penned cmd file that allows collection of 2 full
> screen images over time?
>
>  
>
> Thanks,
>
>  
>
> Daniel
>
>  
>
> Daniel Brotchie
>
>  
>
> Ophthalmology
>
> University of Liverpool
>
> UK
>
>  
>
> [hidden email]
>
Brotchie, Daniel Brotchie, Daniel
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Re: MRC-600 command

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hi Dale,

The inverted system runs on COMOS 7.1 beta.

Thanks,

Daniel

-----Original Message-----
From: Confocal Microscopy List [mailto:[hidden email]] On Behalf Of Dale Callaham
Sent: 18 January 2008 18:17
To: [hidden email]
Subject: Re: MRC-600 command

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hi Daniel,

What versions of software are you using?

Dale

Brotchie, Daniel wrote:

> Search the CONFOCAL archive at
> http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
> Hi,
>
>  
>
> Are there any retro MRC-600 users who can help me please?
>
>  
>
> Here in Liverpool, we are happily still using both an upright and an
> inverted MRC-600.
>
>  
>
> I would like to use the inverted system to take time lapse images of
> live cells and collect images from both channels. The software allow me
> to do this, but only to collect a half screen image from each channel.
> Does anyone have a self penned cmd file that allows collection of 2 full
> screen images over time?
>
>  
>
> Thanks,
>
>  
>
> Daniel
>
>  
>
> Daniel Brotchie
>
>  
>
> Ophthalmology
>
> University of Liverpool
>
> UK
>
>  
>
> [hidden email]
>
Warren Zipfel Warren Zipfel
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Re: MRC-600 command

In reply to this post by Brotchie, Daniel
Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal Hi Daniel,

I'm glad to see that 600s are still out there and being used.  The MRC600 is really a pretty amazing machine - we have one that's been basically turned on since 1992 and still runs perfectly (it's mounted up on an upright system and it's hard to reach the on/off switch so everyone leaves it on).

I assume you mean switches back between channels (768 x 512). This one takes z stacks, but if you just want at single image (from each channel) at each time point either set %2 to 1 or remove the second for loop altogether.

For z-stepping  you'll need to change the $si %3  to the MPL motor command (i.e. motor %3).  We use a different z stepper and talk to it by the com port and a small executable (si.exe) that MPL shells out to.

Save the macro as a text file to something like z2ch.cmd.
to use - as an example, to take a 10 image stack over 10 time points at a 2 micron step and a 10 sec wait type:
%z2ch a 10 2 3 10 10

You end up with 20 z-stacks named ach1_1.pic, ach2_1.pic etc...

! 2 channel zseries over time
!%1=filename %2 = # of sections %3 = stepsize
!%4 = # of aves %5 = wait (in secs) %6 = #stacks
wait 0
live filter k %4
for t = 1, %6
   for i = 1, %2
       print Image #i of %2, channel 1
       live ch 1
       collect
       put %1c1_#t #i
       print Image #i of %2, channel 2
       live ch 2
       collect
       put %1c2_#t #i
       $si %3
       wait %5
   next i
next t
live filter k 0
live filter direct


At 12:57 PM 1/18/2008, you wrote:
Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
Hi,
 
Are there any retro MRC-600 users who can help me please?
 
Here in Liverpool, we are happily still using both an upright and an inverted MRC-600.
 
I would like to use the inverted system to take time lapse images of live cells and collect images from both channels. The software allow me to do this, but only to collect a half screen image from each channel. Does anyone have a self penned cmd file that allows collection of 2 full screen images over time?
 
Thanks,
 
Daniel
 
Daniel Brotchie
 
Ophthalmology
University of Liverpool
UK
 
[hidden email]