Jeff Hardin |
Dear Confocal friends,
We are considering changing our software platform for acquiring Yokogawa spinning disc images from Perkin-Elmer Ultraview to Volocity. One thing the P-E software is really good at, which also turns out to be tough in Volocity, is displaying image stacks from a 4d dataset on the fly as projections on the fly. Ultraview allows one to project a range of focal planes centered at the currently selected focal plane. This doesn't appear to require loading the entire dataset into RAM, which is a big plus. We would like to upgrade, since the Ultraview software requires Windows 2000. We'd like to move to a more modern operating system. Does anyone know of a way to do this easily in ImageJ? If you know of a commercial software platform, I'd appreciate an email off-list. Thanks in advance, Jeff ---------------------------------------------- Jeff Hardin Professor and Chair, Department of Zoology Director, Biology Core Curriculum University of Wisconsin 1117 W. Johnson St. Madison, WI 53706 voice: (608) 262-9634 fax: (608) 262-7319 email: [hidden email] |
Jeff Hardin wrote:
> Dear Confocal friends, > > We are considering changing our software platform for acquiring > Yokogawa spinning disc images from Perkin-Elmer Ultraview to Volocity. > One thing the P-E software is really good at, which also turns out to > be tough in Volocity, is displaying image stacks from a 4d dataset on > the fly as projections on the fly. Ultraview allows one to project a > range of focal planes centered at the currently selected focal plane. > This doesn't appear to require loading the entire dataset into RAM, > which is a big plus. We would like to upgrade, since the Ultraview > software requires Windows 2000. We'd like to move to a more modern > operating system. > > Does anyone know of a way to do this easily in ImageJ? If you know of > a commercial software platform, I'd appreciate an email off-list. that much work. getting it to work with a broad range of formats and interact with other tools properly, would be work. depending on how quick you need it, this feature is supported in the next major version of endrov (3.x, www.endrov.net), runs on all operating systems. /Johan > > Thanks in advance, > > Jeff > ---------------------------------------------- > Jeff Hardin > Professor and Chair, Department of Zoology > Director, Biology Core Curriculum > University of Wisconsin > 1117 W. Johnson St. > Madison, WI 53706 > voice: (608) 262-9634 > fax: (608) 262-7319 > email: [hidden email] > > -- -- ------------------------------------------------ Johan Henriksson MSc Engineering PhD student, Karolinska Institutet http://mahogny.areta.org http://www.endrov.net |
Jason Swedlow |
Hi All-
The OME Consortium has been working on a MIP facility within OMERO for the last few months. We've just released this as OMERO-Beta3.1 (see our OMERO Downloads page at http://openmicroscopy.org/site/downloads/omero-downloads for more info). OMERO applications run on all major operating systems and of course are open source and freely available. For info on running and installing, see our video screencast pages at http://openmicroscopy.org/site/videos and installation instructions at http://trac.openmicroscopy.org.uk/omero/wiki/OmeroInstall Cheers, Jason On Thu, Oct 9, 2008 at 7:47 AM, Johan Henriksson <[hidden email]> wrote:
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