Programming the Leica DM IRBE via DM SDK?

[Tong]

*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****

Dear list,
This may be a little bit away from the confocal topics, but here seems
the best place to find a solution.
I am trying to merge a Leica DM IRBE to the confocal microscope I
built by myself. The scope itself has an internal motor to do
focusing. My question is how I can get a control from my own software
on that stage. I read about that Leica has a DM SDK available, but
couldn't find any document for programming.
Has anyone have any experience of using that SDK?
Any solutions or suggestions are appreciated.


Tong Ye, Ph.D.
Assistant Professor
Tech. Director of Neuroimaging Core, Blueprint Core Center
Neurobiology, SHEL-1103
The University of Alabama at Birmingham
1825 University Blvd.
Birmingham, AL 35294-2182
205.934.5626 (office)
205.934.6571 (fax)
tye AT nrc.uab.edu

[Csúcs Gábor]

*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****

Dear Tong Ye,

I'd take a look at the Micromanager (www.micro-manager.org). They seem to
have support for the Leica DM series.

Greetings   Gabor


Light Microscopy and Screening Centre
ETH Zurich, HPM G41
Schafmattstrasse 18
CH-8093, Zurich
Switzerland

Phone: [phone]
Mobile: [phone]







On 4/3/12 8:28 PM, "Tong Ye" <[hidden email]> wrote:

>*****
>To join, leave or search the confocal microscopy listserv, go to:
>http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
>*****
>
>Dear list,
>This may be a little bit away from the confocal topics, but here seems
>the best place to find a solution.
>I am trying to merge a Leica DM IRBE to the confocal microscope I
>built by myself. The scope itself has an internal motor to do
>focusing. My question is how I can get a control from my own software
>on that stage. I read about that Leica has a DM SDK available, but
>couldn't find any document for programming.
>Has anyone have any experience of using that SDK?
>Any solutions or suggestions are appreciated.
>
>
>Tong Ye, Ph.D.
>Assistant Professor
>Tech. Director of Neuroimaging Core, Blueprint Core Center
>Neurobiology, SHEL-1103
>The University of Alabama at Birmingham
>1825 University Blvd.
>Birmingham, AL 35294-2182
>205.934.5626 (office)
>205.934.6571 (fax)
>tye AT nrc.uab.edu

[Tong]

*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****

Hi Gabor,
Thanks for the info. It is really a valuable source. I am trying to
figure out if I can use the drivers from Matlab.
Best wishes,
Tong

On Tue, Apr 3, 2012 at 2:24 PM, Csúcs  Gábor <[hidden email]> wrote:

> *****
> To join, leave or search the confocal microscopy listserv, go to:
> http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
> *****
>
> Dear Tong Ye,
>
> I'd take a look at the Micromanager (www.micro-manager.org). They seem to
> have support for the Leica DM series.
>
> Greetings   Gabor
>
>
> Light Microscopy and Screening Centre
> ETH Zurich, HPM G41
> Schafmattstrasse 18
> CH-8093, Zurich
> Switzerland
>
> Phone: [phone]
> Mobile: [phone]
>
>
>
>
>
>
>
> On 4/3/12 8:28 PM, "Tong Ye" <[hidden email]> wrote:
>
>>*****
>>To join, leave or search the confocal microscopy listserv, go to:
>>http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
>>*****
>>
>>Dear list,
>>This may be a little bit away from the confocal topics, but here seems
>>the best place to find a solution.
>>I am trying to merge a Leica DM IRBE to the confocal microscope I
>>built by myself. The scope itself has an internal motor to do
>>focusing. My question is how I can get a control from my own software
>>on that stage. I read about that Leica has a DM SDK available, but
>>couldn't find any document for programming.
>>Has anyone have any experience of using that SDK?
>>Any solutions or suggestions are appreciated.
>>
>>
>>Tong Ye, Ph.D.
>>Assistant Professor
>>Tech. Director of Neuroimaging Core, Blueprint Core Center
>>Neurobiology, SHEL-1103
>>The University of Alabama at Birmingham
>>1825 University Blvd.
>>Birmingham, AL 35294-2182
>>205.934.5626 (office)
>>205.934.6571 (fax)
>>tye AT nrc.uab.edu

[Vitaly Boyko]

we are interested in MATLAB/CUDA code for PALM/SIM/STORM/RES
*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****

Dear All,

we are interested in MATLAB/CUDA code for PALM/SIM/STORM/RESOLFT, etc. data processing. Is there any commercial and/or 3rd party software/code that could optimally split the jobs between multi-CPUs and 2+ GPUs for intensive image processing jobs? I have also heard of an open source (GraspJ). Any suggestions would be greatly appreciated.

Thank you, 

Vitaly 


Vitaly Boyko, Ph.D.
Germantown, MD 20874
301-515-7833

[lechristophe]

*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****

Hi Vitaly,

Check this paper from K A Lidke's lab:

Fast, single-molecule localization that achieves theoretically minimum
uncertainty.
Smith CS, Joseph N, Rieger B, Lidke KA.
Nat Methods. 2010 May;7(5):373-5. Epub 2010 Apr 4.
http://www.ncbi.nlm.nih.gov/pubmed/20364146

There is MATLAB code available as supplementary material and also at
http://www.diplib.org/add-ons/

Cheers,

Christophe

On Sat, Apr 7, 2012 at 21:30, Vitaly Boyko <[hidden email]> wrote:

> we are interested in MATLAB/CUDA code for PALM/SIM/STORM/RES
> *****
> To join, leave or search the confocal microscopy listserv, go to:
> http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
> *****
>
> Dear All,
>
> we are interested in MATLAB/CUDA code for PALM/SIM/STORM/RESOLFT, etc.
> data processing. Is there any commercial and/or 3rd party software/code
> that could optimally split the jobs between multi-CPUs and 2+ GPUs for
> intensive image processing jobs? I have also heard of an open source
> (GraspJ). Any suggestions would be greatly appreciated.
>
> Thank you,
>
> Vitaly
>
>
> Vitaly Boyko, Ph.D.
> Germantown, MD 20874
> 301-515-7833
>
>