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Dear all,
Today we are releasing Bio-Formats 6.5.1 which included the following changes:
File format fixes and improvements:
* Aperio SVS / Aperio AFI
- fixed a Null Pointer Exception when exposure time is not defined
* Big Data Viewer
- corrected series indexes for non flattened multi resolution images
* Cellomics
- physical sizes are now set for all series rather than just the first
* Imspector OBF
- file format version and stack version are now recorded as part of global metadata
* MetaMorph
- improved wavelength parsing using Metamorph XML or original metadata
* Mikroscan TIFF
- stricter format recognition now used to prevent erroneous use of the reader
* Ventana BIF
- added support for LEFT overlap direction (thanks to Joan Gibert)
* Zeiss CZI
- fixed a bug to ensure Channel Illumination Type is not overridden by display settings
Documentation improvements:
* added link from OME-TIFF page to commercial partners page
* updated links for Biplane to now use Oxford Instruments
* fixed a number of broken hyperlinks in documentation
Component updates:
* jxrlib was upgraded to 0.2.4
Bio-Formats improvements:
* fixed a bug in bfconvert for multi-series files with varying image sizes
* removed the logging OMERO IDs passed to FormatReader and ImageReader
Full details can be found at
https://docs.openmicroscopy.org/bio-formats/6.5.1/about/whats-new.htmlThe software is available at:
https://www.openmicroscopy.org/bio-formats/downloads/and will shortly be available from the Java-8 update site for Fiji users.
Any problems or comments, please use the Image.sc forum<
https://forum.image.sc/tags/bio-formats>
Regards,
The OME Team
The University of Dundee is a registered Scottish Charity, No: SC015096
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