Release of Bio-Formats-C++ 5.1.4

[Roger Leigh]

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Dear All,

Today we have released the binary builds of Bio-Formats-C++ 5.1.4,
together with the ome-cmake-superbuild package used for building
Bio-Formats-C++ and its dependencies on Windows and other platforms.
This is a new package split out from the Bio-Formats sources, which may
be used to build the libraries required by Bio-Formats such as zlib,
bzip2, icu, boost, libtiff and xerces-c.

The major goal of this release was porting Bio-Formats-C++ to Microsoft
Windows, initially supporting Visual Studio 2013 (VS2013). This goal was
realised, with Bio-Formats 5.1.4 (released on 07/09/15) being buildable
with both VS2013 and also with VS2012.  The CMake Super-Build released
today works with VS2013 with the "Visual Studio 12 2013" (msbuild)
generator; work has been done to support additional versions of Visual
Studio and additional generators, which will be completed in subsequent
releases.

See http://downloads.openmicroscopy.org/bio-formats-cpp/5.1.4/ for links
to the source releases, documentation and API reference, and binary
builds for a number of platforms which now include Windows with VS2013.

Bio-Formats Windows portability changes:

• Use pImpl in OME model objects to simplify future DLL exports
• Provide compatibility snprintf(3) for VS2013 and VS2012
• Use _putenv_s rather than setenv(3) with MSVC
• Added workaround for missing va_copy() in VS2012
• Made CMake use of shared or static libraries configurable; Windows
currently uses static libraries until the libraries are updated to have
the appropriate DLL exports
• Corrected use of boost::filesystem to use the correct native path type
on all platforms; the TIFF code now uses native paths and the wide
version of TIFFOpen on Windows
• Fixed a number of MSVC warnings, primarily unused variables in catch
statements which GCC and clang don't warn about
• Do not reuse or compare iterators with different containers; MSVC
doesn't like this and it's technically incorrect
• Updated unit tests to cope with minor floating point formatting
differences on Windows
• Corrected static initialisation ordering issues on Windows (and with
static libraries) in a number of places; these are primarily static
mappings used during program initialisation.  Previously we were making
some assumptions which only held true with ELF/Mach-O linkers.
• Added missing directories to the include search path
• Added missing includes where missing on Windows but implicit elsewhere
• Reordered include order for lexical_cast to ensure usable MPL limits;
added additional MPL tests with boost::variant to test the limits
• Search for both Debug and Release libraries on Windows, so the correct
Debug and Release library dependencies will always be used

Additional Bio-Formats changes:

• Added additional functional checks for broken GCC <regex> implementation
• Corrected return in Timestamp ostream output operator
• Made CMake checks for xsd-fu failures stricter
• Removed CMake warnings about duplicate targets created by xsd-fu
• Default logging level set under all circumstances

CMake Super-Build components:

   bioformats 5.1.4
   boost 1.58
   bzip2 1.0.6
   icu 55.1
   libpng 1.6.17
   tiff 4.0.6
   xerces-c 3.1.2
   zlib 1.2.8

CMake Super-Build changes:

• CMake Super-Build logic moved out of the bioformats source tree into a
separate source repository (see https://github.com/ome/ome-cmake-superbuild)
• Added ICU build
• Added VS2012 support to Xerces-C build
• Allowed use of generators other than Visual Studio's msbuild on
Windows such as Ninja, to allow fast parallel building (not yet fully
functional)
• Allowed verbose building with the Ninja generator
• Corrected libtiff symbol versioning
• Updated libtiff to 4.0.6; this provides BigTIFF support for Windows
• Allowed building from libtiff CVS HEAD

The software release is available at:
http://downloads.openmicroscopy.org/bio-formats-cpp/5.1.4

For any problems or comments, please use the OME forums or mailing
lists: http://www.openmicroscopy.org/site/community

Roger Leigh
on behalf of the OME team

--
Dr Roger Leigh -- Open Microscopy Environment
Wellcome Trust Centre for Gene Regulation and Expression,
College of Life Sciences, University of Dundee, Dow Street,
Dundee DD1 5EH Scotland UK   Tel: [phone]

The University of Dundee is a registered Scottish Charity, No: SC015096