Release of OME Consortium Projects

[Jason Swedlow-2]

*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
*****

Dear All,

Today we are releasing several "Projects" from the OME Consortium which add
extra functionality and are fully compatible with the newly released OMERO
and Bio-Formats 5.0.0. The Projects included in this release are:

*FLIMfit 4.6.4*
Mac-only, Windows version to follow
FLIMfit is now compatible with OMERO 5.0.0 and features support for
LaVision Imspector .msr files via Bio-Formats 5.0.0;
Support for Becker & Hickl SPCImage .sdt files has been extended to include
measurement mode 13;
Download from http://downloads.openmicroscopy.org/flimfit/4.6.4/

*u-track 2.1.1*
u-track now supports OMERO 5.0.0 and is bundled with Bio-Formats 5.0.0;
Improvements include new graphical interfaces to login and browse data onto
an OMERO server;
Download from http://downloads.openmicroscopy.org/u-track/2.1.1/

*OMERO.webtagging 1.0.0*
First full release of this application.
OMERO.webtagging provides a semi-automatic process for creating and
applying tags based on the filename, path and extension of the original
data.
Improvements over the beta version include support for displaying all
existing tags, tighter webclient integration and some performance
enhancements.
Download from http://downloads.openmicroscopy.org/webtagging/1.0.0/

*OMERO.figure 1.0.0-beta1*
OMERO.figure is a new web app for creating figures from images in OMERO.
It has tools for quickly aligning panels, adjusting rendering settings,
scrolling Z and T, adding labels and displaying scalebars. Images can be
exported as PDF or saved and shared via the web.
See http://will-moore.github.io/figure/ for more information.
This is a beta release; feedback and comments welcome!
Download from http://downloads.openmicroscopy.org/figure/1.0.0-beta1/

*OMERO.mtools 1.0.0*
OMERO.mtools is a suite of MATLAB-based tools for carrying out common image
analysis tasks on images stored in an OMERO.server;
it has its own GUI and only requires an installation of MATLAB Compiler
Runtime to run.
OMERO.mtools has been used to analyse data for several papers published by
groups in Dundee; comments and feedback welcome!
Download from http://downloads.openmicroscopy.org/mtools/1.0.0/

*OMERO.searcher 0.1.0*
OMERO.searcher provides the ability to search for images in OMERO by their
content (e.g., subcellular patterns) rather than just by their annotations.
This is an early preview release, not intended for production use.
Comments and feedback welcome!
Download from http://downloads.openmicroscopy.org/searcher/0.1.0/

*OMERO.csvtools 0.2.2*
OMERO.csvtools is a script-based tool for mass tagging operations;
Tag definitions are supplied in a simple, conventional CSV structure, and
may be provided through a local file on disk or fetched remotely from an
OMERO.server file store.
This is a preview release, comments and feedback welcome!
Download from https://bintray.com/imagopole/omero/omero-csv-tools/

These projects are available to download at:
http://downloads.openmicroscopy.org/

Further information for each project is available at:
http://www.openmicroscopy.org/site/products/partner
The OME Consortium will keep on maintaining and developing these
applications. Any problems or comments, please use the OME Forums or
mailing lists:

http://www.openmicroscopy.org/site/community

Regards,

The OME Team


--
**************************
Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee  DD1 5EH
United Kingdom

phone [phone]
Intl phone:  [phone]
FAX   [phone]
email: [hidden email]

Lab Page: http://www.lifesci.dundee.ac.uk/gre/staff/jason-swedlow
Open Microscopy Environment: http://openmicroscopy.org
**************************