home-made glass-bottomed cell culture dishes

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Melinda Larsen Melinda Larsen
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home-made glass-bottomed cell culture dishes

I have been ordering custom-made glass-bottomed culture dishes from
MatTek, but they have changed their manufacturing process such that it
is fully automated and is no longer amenable to customization. Does
anyone make their own glass-bottomed dishes by punching holes in the
bottom of plastic culture dishes and gluing coverslips on the bottom?
If so, could you give me some tips on how you do it? Thanks!

Melinda Larsen, Ph.D., Assistant Professor
University at Albany, SUNY
Department of Biological Sciences
Paul Herzmark Paul Herzmark
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Re: home-made glass-bottomed cell culture dishes

You can make gazillions easily.

Drill a big hole in the plastic dish. If you have a drill press it is assembly line speed. Circle the hole with some silicon glue (sparingly) like is used for aquariums. stick on your coverslip. Make sure it is nice a parallel to the rest of the plastic dish bottom so the whole microscope field is in focus at the same time.

You can sterilize them with EtOH.


Paul Herzmark
Specialist
[hidden email]

Department of Molecular and Cell Biology
479 Life Science Addition
University of California, Berkeley
Berkeley, CA  94720-3200
(510) 643-9603
(510) 643-9500 fax


On Wed, Jan 7, 2009 at 6:49 PM, Melinda Larsen <[hidden email]> wrote:
I have been ordering custom-made glass-bottomed culture dishes from
MatTek, but they have changed their manufacturing process such that it
is fully automated and is no longer amenable to customization. Does
anyone make their own glass-bottomed dishes by punching holes in the
bottom of plastic culture dishes and gluing coverslips on the bottom?
If so, could you give me some tips on how you do it? Thanks!

Melinda Larsen, Ph.D., Assistant Professor
University at Albany, SUNY
Department of Biological Sciences

Knecht, David Knecht, David
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Melinda Larsen
We used to do this (now using Willco Wells).  We found it easier to use Glass Petri dishes as they could be easily cut by someone who knows how to drill glass (our shop did this).  Then the coverslips were glued onto the bottom forming a small well in the bottom of the dish.  I don't remember what glue we used but it was not hard to reglue broken ones.  Dave

On Jan 7, 2009, at 9:49 PM, Melinda Larsen wrote:

I have been ordering custom-made glass-bottomed culture dishes from
MatTek, but they have changed their manufacturing process such that it
is fully automated and is no longer amenable to customization. Does
anyone make their own glass-bottomed dishes by punching holes in the
bottom of plastic culture dishes and gluing coverslips on the bottom?
If so, could you give me some tips on how you do it? Thanks!

Melinda Larsen, Ph.D., Assistant Professor
University at Albany, SUNY
Department of Biological Sciences

Dr. David Knecht    
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)


Melinda Larsen Melinda Larsen
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Paul Herzmark
Thanks, Paul! I don't have a drill press, but I'll see if my machine
shop does. If not, I'll get one.

On Wed, Jan 7, 2009 at 10:50 PM, Paul Herzmark <[hidden email]> wrote:

> You can make gazillions easily.
>
> Drill a big hole in the plastic dish. If you have a drill press it is
> assembly line speed. Circle the hole with some silicon glue (sparingly) like
> is used for aquariums. stick on your coverslip. Make sure it is nice a
> parallel to the rest of the plastic dish bottom so the whole microscope
> field is in focus at the same time.
>
> You can sterilize them with EtOH.
>
>
> Paul Herzmark
> Specialist
> [hidden email]
>
> Department of Molecular and Cell Biology
> 479 Life Science Addition
> University of California, Berkeley
> Berkeley, CA  94720-3200
> (510) 643-9603
> (510) 643-9500 fax
>
>
> On Wed, Jan 7, 2009 at 6:49 PM, Melinda Larsen <[hidden email]>
> wrote:
>>
>> I have been ordering custom-made glass-bottomed culture dishes from
>> MatTek, but they have changed their manufacturing process such that it
>> is fully automated and is no longer amenable to customization. Does
>> anyone make their own glass-bottomed dishes by punching holes in the
>> bottom of plastic culture dishes and gluing coverslips on the bottom?
>> If so, could you give me some tips on how you do it? Thanks!
>>
>> Melinda Larsen, Ph.D., Assistant Professor
>> University at Albany, SUNY
>> Department of Biological Sciences
>
>
Hu Xian-2 Hu Xian-2
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Paul Herzmark
My colleague did this before. After drilling the hole, they used sand paper to smoothen the edge.

I was reading Jim's book,and happened to find the following sentence in PC's chapter.

"A rectangular hole was cut at the bottom of the Petri dish and a coverslip was glued over it with SilGaurd." (another type of glue you can use other than the one Paul mentioned)

Handbook of Biological Confocal Microscopy,3rd Edition, Chapter21 Interaction of Light with Botanical Specimens, Chapter 21. P431.


Hope it helps.


Edna



Paul Herzmark wrote:
You can make gazillions easily.

Drill a big hole in the plastic dish. If you have a drill press it is assembly line speed. Circle the hole with some silicon glue (sparingly) like is used for aquariums. stick on your coverslip. Make sure it is nice a parallel to the rest of the plastic dish bottom so the whole microscope field is in focus at the same time.

You can sterilize them with EtOH.


Paul Herzmark
Specialist
[hidden email]

Department of Molecular and Cell Biology
479 Life Science Addition
University of California, Berkeley
Berkeley, CA  94720-3200
(510) 643-9603
(510) 643-9500 fax


On Wed, Jan 7, 2009 at 6:49 PM, Melinda Larsen <[hidden email]> wrote:
I have been ordering custom-made glass-bottomed culture dishes from
MatTek, but they have changed their manufacturing process such that it
is fully automated and is no longer amenable to customization. Does
anyone make their own glass-bottomed dishes by punching holes in the
bottom of plastic culture dishes and gluing coverslips on the bottom?
If so, could you give me some tips on how you do it? Thanks!

Melinda Larsen, Ph.D., Assistant Professor
University at Albany, SUNY
Department of Biological Sciences


Hu Xian-2 Hu Xian-2
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Re: Sample prep tips for 3D confocal of pollen

In reply to this post by Paul Herzmark
Since I'm reading this very chapter now,Here are the possibly useful things I extracted from it.


Microspores and Pollen Grains

1. Pollen grains are usually highly absorbing, scattering and pigmented(hence strongly autofluorescenting in visible spectrum).If staining is necessary, considering NIR dyes.
2. Pollen grains/microspores can be handled the same way as suspension-cultured cells.
3. If possible, fix,stain and clear tissue with methyl-salicylate, so as to match the optical property as closely as possible to the design criteria of lens.
4. Multi-photon imaging and adaptive deconvolution might be helpful for obtaining high resolution image


(Handbook of Biological Confocal Microscopy,3rd Edition, Chapter21
Interaction of Light with Botanical Specimens, Chapter 21. P431.)



Edna


--------------------
Hi Doug,
I have been doing some 3D pollen imaging with good success. So far I imaged
pollen grains up to 50 um in diameter, and it seems I get almost the same
resolution on the far side as I get on the side closest to the coverslip.

The sample prep was the key.

1st, the pollen I received from our pollen expert was extracted (not sure of
the exact protocol, apparently somehting the pollen researchers do routinely),
and stored in glacial acetic acid. The result is that the highly absorbent and
scattering contents of the pollen grain has been removed, and all that is left is
the pollen "shell" with its characteristic shape and features. It has enough
autofluorescence for confocal imaging without any staining.

The pollen is gradually re-hydrated and infiltrated with 2-2-thiodiethanol
mounting medium.
below is the prep protocol: The microwave just accelerates the process, you
could just do longer time each step without the MW.

100 µl of the pollen suspension was placed in a microcentrifuge tube and
gradually re-hydrated by adding increasing amounts of water (from 10 µl to
600 µl), pulse-mixing (vortexing) and irradiating in a Pelco Biowave (Ted Pella
Inc., Redding, CA) laboratory microwave processor for 1 min at 230W to
accelerate the diffusion process. Total 12 steps were performed. Pollen was
then spun down by centrifugation at 500 x g for 1 min, resuspended in
phosphate buffered saline (PBS; 140 mM NaCl, 3 mM KCl, 10 mM Na2HPO4, 2
mM KH2PO4) and microwaved as above.

Subsequently, the pollen was gradually infiltrated with 2,2’-thiodiethanol
(TDE), a mounting medium for high-resolution microscopy (Staudt et al.,
2007). The pollen was spun down as above before each step. The pollen pellet
was resuspended using 10%, 25%, 50% v/v TDE/PBS mixture, and finally three
times in 97% v/v TDE/PBS, In each step, 1 min microwave irradiation at 230W
was used after resuspension.  
The pollen was then spun down and the pellet resuspended and stored in 97%
TDE/PBS.

Confocal Microscopy (Inverted microscope)
For microscopy, a droplet of the pollen suspension was applied to a coverslip-
bottom imaging chamber (coverslip thickness ~175 µm) and the pollen
immobilized by placing a small coverslip on the top of the droplet, with a small
dab of dried nail polish on one side as a spacer so that the weight of the
coverslip does not cause flattening of the pollen grain. Close to the spacer,
there layer of the mounting medium is too deep, and the pollen is floating
freely and cannot be imaged. On the other end of the coverslip, there is no
spacer and the pollen is squished, deformed. So I try to find a position in
between, where the pollen is not moving, but is not visibly squished.

Imaging was done using Olympus FV1000 laser scanning confocal microscope
system attached to an Olympus IX81 inverted microscope with a 100x/1.4 oil
immersion objective (UPLSAPO 100x/1.4). Fluorescence was excited using 488
nm Argon ion laser, the fluorescence detector was set to 500-600nm
bandpass. Laser output was programmed  to increase as we go deeper from
the surface in order to compensate for the loss of signal. Typically, the laser
output would double from 8 to 16% for a Z-stack going from 0 to 50 um depth.
 
Confocal scanning was performed in the photon counting mode, scan speed
(pixel dwell time) was 20 µs/pixel or 10 µs/pixel. The confocal aperture was
set to 120 µm, which corresponds to 0.75 Airy Unit. The confocal zoom and
scan size was set to achieve 65nm pixel size in XY. The z-step was set to
130nm.
Typical acquisition time was between 20 and 50 min per stack, depending on
the size of the pollen grain and scan speed (i.e., signal intensity).

You may not need to do such a fine XYZ step, but I have to say the resulting
datasets look great;

Sincerely,

Stan Vitha
Microscopy and Imaging Center,
Texas A&M University


On Tue, 6 Jan 2009 10:47:06 -0700, [hidden email] wrote:

>I have very close to zero experience prepping plant tissues for any type of
>microscopy.  I've been contacted by a botanist that is interested in looking
>at a variety of pollen types and he's never done confocal.  He'd like to
>look at the 3D structures and it sounds like good 3D may very well be
>important.
>
>
>
>I know from limited experience that the far side of a pollen grain often
>doesn't look as good in a 3D rendering, presumably due to spherical
>aberration, scattering, and other optical effects.  I gather from the
>resources I have that pollen is highly autofluorescent across the entire VIS
>spectrum (probably why the vendors love to use it for demos).
>
>
>
>Any tips, suggested review articles, web sites, etc that people could point
>me to for sample prep techniques?  Any microscopy caveats to be aware of?
>
>
>
>Many thanks.
>
>Doug
>
>
>
>^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
^^^^^^^^^^^^

>
>Douglas W. Cromey, M.S. - Assistant Scientific Investigator
>
>Dept. of Cell Biology & Anatomy, University of Arizona
>
>1501 N. Campbell Ave, Tucson, AZ  85724-5044 USA
>
>
>
>office:  AHSC 4212         email: [hidden email]
>
>voice:  520-626-2824       fax:  520-626-2097
>
>
>
>http://swehsc.pharmacy.arizona.edu/exppath/
>
>Home of: "Microscopy and Imaging Resources on the WWW"
>
>
>
>
vaishali kailaje vaishali kailaje
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Melinda Larsen
Hi,
You can cut the petri plate in the centre approximately 1.5-2cm.
Then stick a coverslip with DPX at the bottom of the plate and allow to dry for a 4-6hrs.
If details required you can write me at my mail id.

Vaishali K.
ACTREC, Tata Memorial Centre,
India.
[hidden email]



--- On Thu, 1/8/09, Melinda Larsen <[hidden email]> wrote:

> From: Melinda Larsen <[hidden email]>
> Subject: home-made glass-bottomed cell culture dishes
> To: [hidden email]
> Date: Thursday, January 8, 2009, 8:19 AM
> I have been ordering custom-made glass-bottomed culture
> dishes from
> MatTek, but they have changed their manufacturing process
> such that it
> is fully automated and is no longer amenable to
> customization. Does
> anyone make their own glass-bottomed dishes by punching
> holes in the
> bottom of plastic culture dishes and gluing coverslips on
> the bottom?
> If so, could you give me some tips on how you do it?
> Thanks!
>
> Melinda Larsen, Ph.D., Assistant Professor
> University at Albany, SUNY
> Department of Biological Sciences


     
Jeremy Adler-2 Jeremy Adler-2
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Melinda Larsen
The easy way to make a hole in a plastic Petri dish is to heat a metal tube,
say an old cork borer, and push it through the bottom of the Petri dish.
This is much easier than drilling.

As an added bonus one surface of Petri dish ends up smooth and can be used
to attach a cover slip, no sanding etc required.
We use nail varnish to attach a cover slip which is less messy than silicon
sealant.


Dr Jeremy Adler

F451a

Cell Biologi

Wenner-Gren Inst.

The Arhenius Lab

Stockholm University

S-106 91 Stockholm

Sweden

tel +46 (0)8 16 2759
-----Original Message-----
From: Confocal Microscopy List [mailto:[hidden email]] On
Behalf Of Melinda Larsen
Sent: den 8 januari 2009 03:49
To: [hidden email]
Subject: home-made glass-bottomed cell culture dishes

I have been ordering custom-made glass-bottomed culture dishes from
MatTek, but they have changed their manufacturing process such that it
is fully automated and is no longer amenable to customization. Does
anyone make their own glass-bottomed dishes by punching holes in the
bottom of plastic culture dishes and gluing coverslips on the bottom?
If so, could you give me some tips on how you do it? Thanks!

Melinda Larsen, Ph.D., Assistant Professor
University at Albany, SUNY
Department of Biological Sciences
RICHARD BURRY RICHARD BURRY
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Paul Herzmark
Paul
 
The biggest problem is parallel to the bottom of the dish!  Small pieces of cut plastic will stick down from the cut edge of the hole, and when the cover slip is glued on, it will be not parallel to the bottom of the dish.  The resulting dish will, when on a microscope stage, will need to be refocused as it is moved. 
 
Dick

----- Original Message -----
From: Paul Herzmark <[hidden email]>
Date: Wednesday, January 7, 2009 10:50 pm
Subject: Re: home-made glass-bottomed cell culture dishes
To: [hidden email]

> You can make gazillions easily.

> Drill a big hole in the plastic dish. If you have a drill press it is assembly line speed. Circle the hole with some silicon glue (sparingly) like is used for aquariums. stick on your coverslip. Make sure it is nice a parallel to the rest of the plastic dish bottom so the whole microscope field is in focus at the same time.

> You can sterilize them with EtOH.


> Paul Herzmark
> Specialist
<A href="javascript:main.compose('new','t=pherzmark@gmail.com')">> pherzmark@...

> Department of Molecular and Cell Biology
> 479 Life Science Addition
> University of California, Berkeley
> Berkeley, CA  94720-3200
> (510) 643-9603
> (510) 643-9500 fax



> On Wed, Jan 7, 2009 at 6:49 PM, Melinda Larsen <<A href="javascript:main.compose('new','t=melinda.larsen@gmail.com')">melinda.larsen@...> wrote:
> I have been ordering custom-made glass-bottomed culture dishes from
> MatTek, but they have changed their manufacturing process such that it
> is fully automated and is no longer amenable to customization. Does
> anyone make their own glass-bottomed dishes by punching holes in the
> bottom of plastic culture dishes and gluing coverslips on the bottom?
> If so, could you give me some tips on how you do it? Thanks!

> Melinda Larsen, Ph.D., Assistant Professor
> University at Albany, SUNY
> Department of Biological Sciences








 
leoncio vergara leoncio vergara
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Re: home-made glass-bottomed cell culture dishes

if you use a dremel machine, with a polishing attachment, on the bottom (outside, no cell side) of the dish, you will avoid that problem. Still make sure you press the coverslip evenly around.
________________________________________
From: Confocal Microscopy List [[hidden email]] On Behalf Of RICHARD BURRY [[hidden email]]
Sent: Thursday, January 08, 2009 6:34 AM
To: [hidden email]
Subject: Re: home-made glass-bottomed cell culture dishes

Paul

The biggest problem is parallel to the bottom of the dish!  Small pieces of cut plastic will stick down from the cut edge of the hole, and when the cover slip is glued on, it will be not parallel to the bottom of the dish.  The resulting dish will, when on a microscope stage, will need to be refocused as it is moved.

Dick

----- Original Message -----
From: Paul Herzmark <[hidden email]>
Date: Wednesday, January 7, 2009 10:50 pm
Subject: Re: home-made glass-bottomed cell culture dishes
To: [hidden email]

> You can make gazillions easily.

> Drill a big hole in the plastic dish. If you have a drill press it is assembly line speed. Circle the hole with some silicon glue (sparingly) like is used for aquariums. stick on your coverslip. Make sure it is nice a parallel to the rest of the plastic dish bottom so the whole microscope field is in focus at the same time.

> You can sterilize them with EtOH.


> Paul Herzmark
> Specialist
> [hidden email]<javascript:main.compose('new','t=[hidden email]')>

> Department of Molecular and Cell Biology
> 479 Life Science Addition
> University of California, Berkeley
> Berkeley, CA  94720-3200
> (510) 643-9603
> (510) 643-9500 fax



> On Wed, Jan 7, 2009 at 6:49 PM, Melinda Larsen <[hidden email]<javascript:main.compose('new','t=[hidden email]')>> wrote:
> I have been ordering custom-made glass-bottomed culture dishes from
> MatTek, but they have changed their manufacturing process such that it
> is fully automated and is no longer amenable to customization. Does
> anyone make their own glass-bottomed dishes by punching holes in the
> bottom of plastic culture dishes and gluing coverslips on the bottom?
> If so, could you give me some tips on how you do it? Thanks!

> Melinda Larsen, Ph.D., Assistant Professor
> University at Albany, SUNY
> Department of Biological Sciences



________________________________
Gary Laevsky-2 Gary Laevsky-2
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Melinda Larsen
Re: home-made glass-bottomed cell culture dishes

Using a Rose Chamber or a modified version thereof entails a little more up front cost but lasts forever.


Best,

Gary Laevsky, Ph.D.
Imaging Application Specialist
Andor Technology
(774) 291 - 9992

----- Original Message -----
From: Confocal Microscopy List <[hidden email]>
To: [hidden email] <[hidden email]>
Sent: Thu Jan 08 12:40:50 2009
Subject: Re: home-made glass-bottomed cell culture dishes

if you use a dremel machine, with a polishing attachment, on the bottom (outside, no cell side) of the dish, you will avoid that problem. Still make sure you press the coverslip evenly around.
________________________________________
From: Confocal Microscopy List [[hidden email]] On Behalf Of RICHARD BURRY [[hidden email]]
Sent: Thursday, January 08, 2009 6:34 AM
To: [hidden email]
Subject: Re: home-made glass-bottomed cell culture dishes

Paul

The biggest problem is parallel to the bottom of the dish!  Small pieces of cut plastic will stick down from the cut edge of the hole, and when the cover slip is glued on, it will be not parallel to the bottom of the dish.  The resulting dish will, when on a microscope stage, will need to be refocused as it is moved.

Dick

----- Original Message -----
From: Paul Herzmark <[hidden email]>
Date: Wednesday, January 7, 2009 10:50 pm
Subject: Re: home-made glass-bottomed cell culture dishes
To: [hidden email]

> You can make gazillions easily.

> Drill a big hole in the plastic dish. If you have a drill press it is assembly line speed. Circle the hole with some silicon glue (sparingly) like is used for aquariums. stick on your coverslip. Make sure it is nice a parallel to the rest of the plastic dish bottom so the whole microscope field is in focus at the same time.

> You can sterilize them with EtOH.


> Paul Herzmark
> Specialist
> [hidden email]<javascript:main.compose('new','t=[hidden email]')>

> Department of Molecular and Cell Biology
> 479 Life Science Addition
> University of California, Berkeley
> Berkeley, CA  94720-3200
> (510) 643-9603
> (510) 643-9500 fax



> On Wed, Jan 7, 2009 at 6:49 PM, Melinda Larsen <[hidden email]<javascript:main.compose('new','t=[hidden email]')>> wrote:
> I have been ordering custom-made glass-bottomed culture dishes from
> MatTek, but they have changed their manufacturing process such that it
> is fully automated and is no longer amenable to customization. Does
> anyone make their own glass-bottomed dishes by punching holes in the
> bottom of plastic culture dishes and gluing coverslips on the bottom?
> If so, could you give me some tips on how you do it? Thanks!

> Melinda Larsen, Ph.D., Assistant Professor
> University at Albany, SUNY
> Department of Biological Sciences



________________________________

mmodel mmodel
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Melinda Larsen
The way we do it is described in:

D. Kline. Quantitative microinjection of mouse oocytes and eggs. pp. 139 and 144. In David Carrol (ed). Microinjection: Methods in applications. Vol 118. 2009 Humana Press

-----Original Message-----
From: Confocal Microscopy List [mailto:[hidden email]] On Behalf Of Melinda Larsen
Sent: Wednesday, January 07, 2009 9:49 PM
To: [hidden email]
Subject: home-made glass-bottomed cell culture dishes

I have been ordering custom-made glass-bottomed culture dishes from
MatTek, but they have changed their manufacturing process such that it
is fully automated and is no longer amenable to customization. Does
anyone make their own glass-bottomed dishes by punching holes in the
bottom of plastic culture dishes and gluing coverslips on the bottom?
If so, could you give me some tips on how you do it? Thanks!

Melinda Larsen, Ph.D., Assistant Professor
University at Albany, SUNY
Department of Biological Sciences
Ignatius, Mike Ignatius, Mike
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by RICHARD BURRY
Hi Paul,
 
We did something not mentioned yet, that avoided this issue of canted or tilted coverslips.  Make a donut shaped circle out of standard lab parafilm, the size of the outer diameter of the round cover slip and about 2-3 mm wide.  We made a punch that created these, but you can easily just cut them.
 
After making sure the edges of the hole in the culture dish are smooth, you flip the dish over, place the ring/donut of parafilm down around the outside of the hole, then lay the glass coverslip (only glass will work here) over the parafilm/hole. Then using a heating tool, like a standard soldering iron, lightly touch and heat the glass coverslip edges, which readily melts the parafilm underneath.  When it cools, it forms a perfect, water tight and optically clear seal that is parallel to the dish bottom.  Fun and easy to do, with no toxic (and unevenly applied) glues to worry about.  To avoid lots of rough edges our shop milled the holes, rather than drilling them.  They will know the difference. 
 
Regards,
 
Mike Ignatius


From: Confocal Microscopy List [mailto:[hidden email]] On Behalf Of RICHARD BURRY
Sent: Thursday, January 08, 2009 4:34 AM
To: [hidden email]
Subject: Re: home-made glass-bottomed cell culture dishes

Paul
 
The biggest problem is parallel to the bottom of the dish!  Small pieces of cut plastic will stick down from the cut edge of the hole, and when the cover slip is glued on, it will be not parallel to the bottom of the dish.  The resulting dish will, when on a microscope stage, will need to be refocused as it is moved. 
 
Dick

----- Original Message -----
From: Paul Herzmark <[hidden email]>
Date: Wednesday, January 7, 2009 10:50 pm
Subject: Re: home-made glass-bottomed cell culture dishes
To: [hidden email]

> You can make gazillions easily.

> Drill a big hole in the plastic dish. If you have a drill press it is assembly line speed. Circle the hole with some silicon glue (sparingly) like is used for aquariums. stick on your coverslip. Make sure it is nice a parallel to the rest of the plastic dish bottom so the whole microscope field is in focus at the same time.

> You can sterilize them with EtOH.


> Paul Herzmark
> Specialist
<A href="javascript:main.compose('new','t=pherzmark@gmail.com')">> pherzmark@...

> Department of Molecular and Cell Biology
> 479 Life Science Addition
> University of California, Berkeley
> Berkeley, CA  94720-3200
> (510) 643-9603
> (510) 643-9500 fax



> On Wed, Jan 7, 2009 at 6:49 PM, Melinda Larsen <<A href="javascript:main.compose('new','t=melinda.larsen@gmail.com')">melinda.larsen@...> wrote:
> I have been ordering custom-made glass-bottomed culture dishes from
> MatTek, but they have changed their manufacturing process such that it
> is fully automated and is no longer amenable to customization. Does
> anyone make their own glass-bottomed dishes by punching holes in the
> bottom of plastic culture dishes and gluing coverslips on the bottom?
> If so, could you give me some tips on how you do it? Thanks!

> Melinda Larsen, Ph.D., Assistant Professor
> University at Albany, SUNY
> Department of Biological Sciences








 
Melinda Larsen Melinda Larsen
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Knecht, David
Interesting -- I hadn't thought of using glass dishes. Thanks!

On Wed, Jan 7, 2009 at 10:53 PM, David Knecht ATT
<[hidden email]> wrote:

> We used to do this (now using Willco Wells).  We found it easier to use
> Glass Petri dishes as they could be easily cut by someone who knows how to
> drill glass (our shop did this).  Then the coverslips were glued onto the
> bottom forming a small well in the bottom of the dish.  I don't remember
> what glue we used but it was not hard to reglue broken ones.  Dave
> On Jan 7, 2009, at 9:49 PM, Melinda Larsen wrote:
>
> I have been ordering custom-made glass-bottomed culture dishes from
> MatTek, but they have changed their manufacturing process such that it
> is fully automated and is no longer amenable to customization. Does
> anyone make their own glass-bottomed dishes by punching holes in the
> bottom of plastic culture dishes and gluing coverslips on the bottom?
> If so, could you give me some tips on how you do it? Thanks!
>
> Melinda Larsen, Ph.D., Assistant Professor
> University at Albany, SUNY
> Department of Biological Sciences
>
> Dr. David Knecht
> Department of Molecular and Cell Biology
> Co-head Flow Cytometry and Confocal Microscopy Facility
> U-3125
> 91 N. Eagleville Rd.
> University of Connecticut
> Storrs, CT 06269
> 860-486-2200
> 860-486-4331 (fax)
>
>
Rosemary.White Rosemary.White
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Re: home-made glass-bottomed cell culture dishes

Yes, glass is good because you can recycle a number of times.  Haven't done
this for a while but we used to use large glass slides, about 4 cm by 8 cm
by about 1.5 mm deep, and had ones with different-sized holes in them to
make wells for use in different applications.  You can get lots of different
sizes of coverslips to make the base, and we'd seal them on with valap
(1:1:1 vaseline:lanolin:paraffin), because our plant tissues don't like any
nail polish near them (even the following day after overnight soaking of the
nail polish-sealed wells in buffer), and so we could re-use the slides
easily.  We weren't growing cells on the coverslips, of course, just using
them for microinjection and observation of tissues that needed to stay
immersed.
cheers,
Rosemary


Rosemary White
CSIRO Plant Industry
GPO Box 1600
Canberra, ACT 2601
Australia

ph 61 2 6246 5475
fx 61 2 6246 5334

On 9/01/09 12:33 PM, "Melinda Larsen" <[hidden email]> wrote:

> Interesting -- I hadn't thought of using glass dishes. Thanks!
>
> On Wed, Jan 7, 2009 at 10:53 PM, David Knecht ATT
> <[hidden email]> wrote:
>> We used to do this (now using Willco Wells).  We found it easier to use
>> Glass Petri dishes as they could be easily cut by someone who knows how to
>> drill glass (our shop did this).  Then the coverslips were glued onto the
>> bottom forming a small well in the bottom of the dish.  I don't remember
>> what glue we used but it was not hard to reglue broken ones.  Dave
>> On Jan 7, 2009, at 9:49 PM, Melinda Larsen wrote:
>>
>> I have been ordering custom-made glass-bottomed culture dishes from
>> MatTek, but they have changed their manufacturing process such that it
>> is fully automated and is no longer amenable to customization. Does
>> anyone make their own glass-bottomed dishes by punching holes in the
>> bottom of plastic culture dishes and gluing coverslips on the bottom?
>> If so, could you give me some tips on how you do it? Thanks!
>>
>> Melinda Larsen, Ph.D., Assistant Professor
>> University at Albany, SUNY
>> Department of Biological Sciences
>>
>> Dr. David Knecht
>> Department of Molecular and Cell Biology
>> Co-head Flow Cytometry and Confocal Microscopy Facility
>> U-3125
>> 91 N. Eagleville Rd.
>> University of Connecticut
>> Storrs, CT 06269
>> 860-486-2200
>> 860-486-4331 (fax)
>>
>>
Farid Jalali Farid Jalali
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Re: home-made glass-bottomed cell culture dishes

I'm not sure what a Rose Chamber is but the Atto-chamber that
Molecular Probes/ Invitrogen sells is a fantastic investment. I
switched to this from coverslip bottom dishes and found it very easy
to use and it will last forever.
No commercial interest.
Best
Farid

On 1/8/09, Rosemary White <[hidden email]> wrote:

> Yes, glass is good because you can recycle a number of times.  Haven't done
> this for a while but we used to use large glass slides, about 4 cm by 8 cm
> by about 1.5 mm deep, and had ones with different-sized holes in them to
> make wells for use in different applications.  You can get lots of different
> sizes of coverslips to make the base, and we'd seal them on with valap
> (1:1:1 vaseline:lanolin:paraffin), because our plant tissues don't like any
> nail polish near them (even the following day after overnight soaking of the
> nail polish-sealed wells in buffer), and so we could re-use the slides
> easily.  We weren't growing cells on the coverslips, of course, just using
> them for microinjection and observation of tissues that needed to stay
> immersed.
> cheers,
> Rosemary
>
>
> Rosemary White
> CSIRO Plant Industry
> GPO Box 1600
> Canberra, ACT 2601
> Australia
>
> ph 61 2 6246 5475
> fx 61 2 6246 5334
>
> On 9/01/09 12:33 PM, "Melinda Larsen" <[hidden email]> wrote:
>
>> Interesting -- I hadn't thought of using glass dishes. Thanks!
>>
>> On Wed, Jan 7, 2009 at 10:53 PM, David Knecht ATT
>> <[hidden email]> wrote:
>>> We used to do this (now using Willco Wells).  We found it easier to use
>>> Glass Petri dishes as they could be easily cut by someone who knows how
>>> to
>>> drill glass (our shop did this).  Then the coverslips were glued onto the
>>> bottom forming a small well in the bottom of the dish.  I don't remember
>>> what glue we used but it was not hard to reglue broken ones.  Dave
>>> On Jan 7, 2009, at 9:49 PM, Melinda Larsen wrote:
>>>
>>> I have been ordering custom-made glass-bottomed culture dishes from
>>> MatTek, but they have changed their manufacturing process such that it
>>> is fully automated and is no longer amenable to customization. Does
>>> anyone make their own glass-bottomed dishes by punching holes in the
>>> bottom of plastic culture dishes and gluing coverslips on the bottom?
>>> If so, could you give me some tips on how you do it? Thanks!
>>>
>>> Melinda Larsen, Ph.D., Assistant Professor
>>> University at Albany, SUNY
>>> Department of Biological Sciences
>>>
>>> Dr. David Knecht
>>> Department of Molecular and Cell Biology
>>> Co-head Flow Cytometry and Confocal Microscopy Facility
>>> U-3125
>>> 91 N. Eagleville Rd.
>>> University of Connecticut
>>> Storrs, CT 06269
>>> 860-486-2200
>>> 860-486-4331 (fax)
>>>
>>>
>

--
Sent from my mobile device
Chris Wood-5 Chris Wood-5
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Re: home-made glass-bottomed cell culture dishes

In reply to this post by Melinda Larsen
Cheaper alternatives to the Attofluor chamber are made by Harvard
instruments (cat # 640370), but not autoclavable. We tried sterilising them
with alchohol and UV exposure but this never reliably worked - we'd end up
losing too many experiments with contamination (won't be too problemantic
for short experiments, but we routinely image cells for 24hrs+) for it to be
worth the cost savings.
We also tried the drilling and sticking 100% homemade approach but our ES
cells didn't grow the same, we suspected some toxicity from the glue (we
tested a few).
We now use the Fluorodish from WPI which has a large working area available
on the coverslip (23mm) and the ES cells seem happy to grow there. The boss
is starting to grumble about the cost though, so I might try the Attofluor
approach with an all metal (autoclavable) chamber, but 270 USD for each one
isn't very friendly, four or five would be the minimum required for us. I think I'll
just buy the nitrile o-rings and get a local machine shop to copy the design
instead.

I like the parafilm-soldering iron idea as well, will definitely give it a spin.

Saludos

Chris

Instituto de Biotecnología
Universidad Nacional Autónoma de Mexico