Re: microbead calibration to set psf?

Posted by Glen MacDonald-2 on
URL: http://confocal-microscopy-list.275.s1.nabble.com/microbead-calibration-to-set-psf-tp2560403p2564208.html

Hi Dave,
An easy way to find the focal plane of the smaller beads is to mix in  
a few beads of a larger size. Then you can easily find the surface of  
the slide or the coverlslip on which you applied the psf beads.

Regards,
Glen

On Mar 31, 2009, at 7:11 AM, Guy Cox wrote:

> Europium chelates are phosphorescent rather than luminescent - that  
> is to say, they have a very long - millisecond - fluorescence  
> lifetime.  That should still work in widefield but would be hopeless  
> for confocal.  Pretty much unfadeable, which is a plus.
>
> Tetraspeck bead are for calibrating colocalization rather than PSF -  
> having multiple fluorochromes on one bead must reduce the intensity  
> at any one wavelength.  As I said before, I've used bead from Bangs  
> Labs and I've had good images from beads down to 60nm.  (Though at  
> that scale it requires care and patience).
>
>                                                                        Guy
>
>
> Optical Imaging Techniques in Cell Biology
> by Guy Cox    CRC Press / Taylor & Francis
>     http://www.guycox.com/optical.htm
> ______________________________________________
> Associate Professor Guy Cox, MA, DPhil(Oxon)
> Electron Microscope Unit, Madsen Building F09,
> University of Sydney, NSW 2006
> ______________________________________________
> Phone +61 2 9351 3176     Fax +61 2 9351 7682
> Mobile 0413 281 861
> ______________________________________________
>      http://www.guycox.net
>
>
>
> From: Confocal Microscopy List [mailto:[hidden email]
> ] On Behalf Of David Knecht
> Sent: Tuesday, 31 March 2009 11:57 PM
> To: [hidden email]
> Subject: Re: microbead calibration to set psf?
>
> I am looking for some very bright 100nm beads.  I tried to look for  
> the beads you mention and it looks like Duke Scientific no longer  
> exists and is now part of hte Thermo conglomerate.  The closest  
> thing I found to what you describe is the Europium chelate 100nm  
> beads.  Is that what you were referrring to?  THey provide very  
> little data on fluorescence properties and they are unusual in  
> apparently being broad excitation spectrum but there is no emission  
> spectrum in their literature I can find.  Since they fluoresce  
> maximally at 613nm it would seem they would be a poor fit for most  
> FITC, TRITC, CY3 or CY5 type filter sets.  Can you clarify your  
> experience with them?  Dave
>
> On Mar 31, 2009, at 3:36 AM, Mariette P.C. Kemner - van de Corput  
> wrote:
>
>> I have good experience with fluorescent beads from Duke scientific.  
>> The
>> 100nm beads are very bright and are perfect for determining the  
>> PSF. I use
>> the red, green and blue 100nm beads to determine the PSF in three  
>> channels
>> and to deconvolved my 3 colour FISH images.
>> I have trouble finding the 100nm and 200nm TetraSpeck beads on my  
>> slide
>> beacuse they are rather weak in intensity. So that's why I switched  
>> to the
>> single coloured 100nm beads from DS. The 500nm TetraSpeck beads are  
>> very
>> good and I use them to determine the chromatic shift in 4 channels.  
>> Once
>> made, bead slides can be used for a long period of time.
>>
>> Mariette
>>
>> ____________________________________________
>>
>> Dr. M.P.C. Kemner-van de Corput,
>> ____________________________________________
>>
>> MGC - Dept. of Cell Biology & Genetics
>> Erasmus Medical Center
>> Dr. Molewaterplein 50, 3015 GE Rotterdam
>> POB 2040, 3000 CA Rotterdam, The Netherlands
>>
>> Office: H-Ee751; tel: +31 10 704.3949
>> Lab: H-Ee710; tel lab: +31 10 704.3315
>> tel secr: +31 10 704.3169
>> ____________________________________________
>>
>> http://www2.eur.nl/fgg/ch1/cellbiology/
>> http://www.thesis.kemner.biz/
>> ____________________________________________
>>
>> Op Di, 31 maart, 2009 1:59 am, schreef Matiar Jafari:
>>> hey again,
>>>
>>> I'm trying to find out how and what the best way to setup my own psf
>>> is in AutoQuant.  I know i need microbeads and im wondering what  
>>> brand
>>> and what product i need and then how i need to shoot it and load it.
>>> Also what diameter does it need to be.  A cat# would be great too  
>>> also
>>> i don't know if it matters on what im shooting but just to put it  
>>> out
>>> there im shooting gfp slices.  Sorry if this is vague. Any help  
>>> would
>>> be greatly appreciated.  Thanks in advance
>>>
>>> Thank You
>>> --
>>> Matiar Jafari
>>>
>
> Dr. David Knecht
> Department of Molecular and Cell Biology
> Co-head Flow Cytometry and Confocal Microscopy Facility
> U-3125
> 91 N. Eagleville Rd.
> University of Connecticut
> Storrs, CT 06269
> 860-486-2200
> 860-486-4331 (fax)
>
>
>
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Glen MacDonald
Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
Box 357923
University of Washington
Seattle, WA 98195-7923  USA
(206) 616-4156
[hidden email]

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