Wavelength to RGB coversion

Posted by G. Esteban Fernandez on
URL: http://confocal-microscopy-list.275.s1.nabble.com/Wavelength-to-RGB-coversion-tp5381874.html

I have 4D (xyz + lambda/spectral) stacks from a Zeiss 710 confocal that I need to render in 3D, with the lambda dimension pseudocolored in RGB.  Zeiss AIM/LSM and ZEN software do not render 3D volumes of lambda-colored z-stacks or even export series of lambda-colored planes to TIFF (I'd have to do 'em one by one) so I'm going to color each channel according to wavelength using ImageJ's Image5D format.  Might there be an ImageJ plugin or other software that reads the metadata and does this automatically?

 

Thanks,

Esteban