Re: Wavelength to RGB coversion

Posted by Craig Brideau on
URL: http://confocal-microscopy-list.275.s1.nabble.com/Wavelength-to-RGB-coversion-tp5381874p5385311.html

The latest version of ImageTrak can do this.  Unfortunately it is only
an internal Alpha used amongst our lab group which has not been
released on the website.  If you contact the author, Dr. Stys,
directly he may be willing to let you try the new Alpha version.

Craig

On Sat, Aug 7, 2010 at 3:17 AM, Roshma Azeem <[hidden email]> wrote:

>
> Hi Esteban,
>
> We too face the same problem with 710 meta and Zeiss has no solution for it.
> We have to do this one by one. Even with ImageJ, it cannot be done
> automatically. Though, I tried with ImageTrak in the Mac, I could not do the
> RGB pseudo coloring simultaneously. I guess, we need to ask Zeiss to develop
> a plugin for this problem.
>
> Roshma.
>
>
>
> On Fri, Aug 6, 2010 at 9:59 PM, Craig Brideau <[hidden email]>
> wrote:
>>
>> Our ImageTrak software can handle spectral data and display in RGB.
>>
>> http://www.ucalgary.ca/styslab/imagetrak
>>
>> It is Mac only though.
>>
>> Craig
>>
>>
>> On Fri, Aug 6, 2010 at 1:21 PM, G. Esteban Fernandez
>> <[hidden email]> wrote:
>> > I have 4D (xyz + lambda/spectral) stacks from a Zeiss 710 confocal that
>> > I
>> > need to render in 3D, with the lambda dimension pseudocolored in RGB.
>> > Zeiss AIM/LSM and ZEN software do not render 3D volumes of
>> > lambda-colored
>> > z-stacks or even export series of lambda-colored planes to TIFF (I'd
>> > have to
>> > do 'em one by one) so I'm going to color each channel according to
>> > wavelength using ImageJ's Image5D format.  Might there be an ImageJ
>> > plugin
>> > or other software that reads the metadata and does this automatically?
>> >
>> > Thanks,
>> > Esteban
>
>