Re: DIC/phase through spinning disk

Posted by Guy Cox on
URL: http://confocal-microscopy-list.275.s1.nabble.com/DIC-phase-through-spinning-disk-tp591738p591743.html

Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

You'r right, of course.  I misread the letter as proposing to

process confocal images with QPm.

 

                                                                         Guy

 

Optical Imaging Techniques in Cell Biology
by Guy Cox    CRC Press / Taylor & Francis
    http://www.guycox.com/optical.htm
______________________________________________
Associate Professor Guy Cox, MA, DPhil(Oxon)
Electron Microscope Unit, Madsen Building F09,
University of Sydney, NSW 2006
______________________________________________
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From: Confocal Microscopy List [mailto:[hidden email]] On Behalf Of Christophe Leterrier
Sent: Tuesday, 29 January 2008 11:56 PM
To: [hidden email]
Subject: Re: DIC/phase through spinning disk

Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal But isn't the transmitted light imaging non-confocal in a common confocal setup ? There is a detector and no pinhole on the condenser side, so the transmitted image is non-confocal, right ?

Christophe

On Jan 29, 2008 12:13 PM, Guy Cox <[hidden email]> wrote:

Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Well, I'm baffled. The QPm approach uses defocus contrast to calculate

 phase shift.  Confocal imaging should eliminate this.  So I can't see how

this could work.

 

                                                                                             Guy

 

Optical Imaging Techniques in Cell Biology
by Guy Cox    CRC Press / Taylor & Francis

     http://www.guycox.com/optical.htm
______________________________________________
Associate Professor Guy Cox, MA, DPhil(Oxon)
Electron Microscope Unit, Madsen Building F09,
University of Sydney, NSW 2006
______________________________________________
Phone [phone]     Fax [phone]
Mobile [phone]
______________________________________________
http://www.guycox.net

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From: Confocal Microscopy List on behalf of Stephen Cody
Sent: Tue 08/01/29 11:29 AM

To: [hidden email]

Subject: Re: DIC/phase through spinning disk

Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

G'day David,

 

While I have not tried the following technique with spinning disk confocals, I have used it with brightfield images collected with "conventional point scanning" confocals, I think it should also work well with spinning disk systems.

 

If you have a "through focus" series of brightfield images you can calculate the DIC images (or phase, Hoffman etc, etc) using software called QPm (Or QPI) Developed by Keith A. Nugent et al., and supplied by iatia. See list of papers at   www.iatia.com . You should be able to do this with any archival data you have saved to disk, provided it is a z-series of brightfield images.

 

You can see my paper specifically relating to QPm and confocal:

Cody, S.H., Xiang, S.D., Layton, M.J., Handman, E., Lam, M.H.C., Nice, E.C., and Heath, J.K. A simple method allows DIC imaging in conjunction with confocal microscopy. J. Microscopy.  217: 265-274 (2005).

http://dx.doi.org/10.1111/j.1365-2818.2005.01452.x

 

Application note:

http://www.iatia.com.au/technology/applicationNotes/qpmApplicationWithConfocalMicroscopes.pdf

 

Other application notes:

http://www.iatia.com.au/technology/applicationNotes.asp

 

Cheers

Stephen H. Cody
Microscopy Manager
Central Resource for Advanced Microscopy
Ludwig Institute for Cancer Research
PO Box 2008 Royal Melbourne Hospital
Victoria,      3050
Australia
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email: [hidden email]
www.ludwig.edu.au/labs/confocal.html
www.ludwig.edu.au/confocal

Tip: Learn how to receive reminders about you microscope booking:
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-----Original Message-----
From: Confocal Microscopy List [mailto:[hidden email]] On Behalf Of David Knecht
Sent: Thursday, 10 January 2008 11:58 PM
To: [hidden email]
Subject: DIC/phase through spinning disk

 

We are in the process of putting together a spinning disk confocal system.  We have heard mixed things about how acceptable it is to do transmitted light microscopy (DIC or Phase) through the spinning disk, as opposed to running a separate camera through a separate microscope port.  What have others found?  

 

Dr. David Knecht    

Department of Molecular and Cell Biology

Co-head Flow Cytometry and Confocal Microscopy Facility

U-3125

91 N. Eagleville Rd.

University of Connecticut

Storrs, CT 06269

860-486-2200

860-486-4331 (fax)

 

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