Re: 3D reconstruction from serial sections

Posted by Eric Scarfone on
URL: http://confocal-microscopy-list.275.s1.nabble.com/3D-reconstruction-from-serial-sections-tp7557629p7559844.html

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Hi there,
In the past I've used the Autoaligner module of Imaris that worked remarkably well!
Eric
 
Ps. No commercial interest!


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Eric Scarfone, PhD
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CNRS & Department of Neuroscience, Karolinska Institutet

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-----Original Message-----
From: Confocal Microscopy List [mailto:[hidden email]] On Behalf Of Martin Wessendorf
Sent: 15 May 2012 03:12
To: [hidden email]
Subject: Re: 3D reconstruction from serial sections

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Dear Manuel--

ImageJ (or better yet, its Fiji implementation) is probably the place to start, since it's free and there's a user listserv even more active than this one.

ImageJ (including its listserv) is found at: http://rsbweb.nih.gov/ij/

Fiji is at: http://fiji.sc/wiki/index.php/Fiji

Good luck!

Martin Wessendorf

On 5/13/2012 10:13 PM, Manuel Pele wrote:

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> To join, leave or search the confocal microscopy listserv, go to:
> http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy
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>
> Hi everyone,
>
> I'm looking for a way to reconstruct a full 3D image of my samples
> that I need to image using serial sections. Any tips about which
> software I can use ? Does it work well?
>
> Cheers
>
> Manuel
>

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Martin Wessendorf, Ph.D.                   office: [phone]
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