http://confocal-microscopy-list.275.s1.nabble.com/manual-stitching-problem-tp7581006p7581010.html
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> In image properties in Imarus you should be able to swap Z and T.
> -mc
>
> -----Original Message-----
> From: Confocal Microscopy List [mailto:
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> On Behalf Of Yevgeniy Romin
> Sent: Monday, September 23, 2013 11:04 AM
> To:
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> Subject: manual stitching problem
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> Dear List
>
> I am currently having the following problem. I ran a timelapse using the
> Leica SP8 software, it was a 3x3 tilescan z-stack with 100 timeframes.
> There was a lot of cell movement in the timelapse, and the automatic
> stitching in the Leica software did not do a very good job of stitching the
> images together. All I need is to stitch together the maximum projection
> of the z-stack by manually aligning them. I have tried cropping the
> projection into it's respective 9 parts, both in Imaris and in LAS, since
> it is impossible to get the single tile files from the original lif file in
> the Leica software. Then I have tried stitching these in XUV stitch, but
> the software sees the timepoints in both *.lif and *.ims files that I
> cropped as z-planes instead of timepoints, so I am having difficulty
> stitching it together. XUV stitch seemed appropriate since I can manually
> align the stacks, something I can't do in Metamorph, for example.
>
> If anybody has came across a similar problem and knows the solution or has
> any suggestions, they will be greatly appreciated.
>
> Thanks to all of you in advance,
>
> Yevgeniy Romin
>
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