Posted by
mahogny on
URL: http://confocal-microscopy-list.275.s1.nabble.com/software-for-high-content-analysis-tp7583201p7583212.html
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Hi Lit-Hsin!
I have never come a across the cellxpress package
before but it seems like a nice base package. However, it seems quite
limited in that it's not open source; After all, in any reasonable
complex project one will benefit from being able to modify and improve
the code. Any plans on resolving this in the future?
cheers,
Johan
2015-01-04 14:37 skrev Lit-Hsin Loo:
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>
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>
> Dear Grzegorz,
>
> It depends on your throughput and the
types of feature that you
> want to measure from the images.
>
>
Columbus is based on OMERO (
https://www.openmicroscopy.org [3]),
> which
is freely available. Both of them are good for managing
> and/or
visualizing large numbers of images, but they only have
> basic
analysis capabilities. Also, the processing is done on the
> server
side, so you would need a very powerful server if the
> workload is
going to be heavy.
>
> You may also try cellXpress
(
http://www.cellxpress.org [4]), which is
> developed by us and
currently one of the fastest software for
> high-content image
analysis. The cellXpress software can extract
> more complex features,
and has a convenient interface for
> exporting the extracted features
into Excel or the R environment
> for further analysis or
visualization.
>
> Please feel free to PM me if you need help on using
cellXpress.
>
> Regards,
> Lit-Hsin
>
> On Sat, 3 Jan 2015 23:13:27
+0100, Grzegorz Chodaczek <
[hidden email]>
> wrote:
>
>> ***** To
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Dear confocal community, I'm interested in a ready-to-use software for
high content analysis of data acquired on a Zeiss spinning disk Cell
Observer with a motorized stage. I was wondering whether any of you ever
compared Columbus (Perkin Elmer) and MetaXpress (Molecular Devices) or
any other similar software? I would appreciate any feedback about their
pros and cons. Best regards, Grzegorz
Links:
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[1]
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy[2]
http://www.imgur.com[3]
https://www.openmicroscopy.org[4]
http://www.cellxpress.org