Posted by
cmci_concordia on
May 10, 2017; 3:24pm
URL: http://confocal-microscopy-list.275.s1.nabble.com/Strange-Photo-conversion-tp7586797p7586812.html
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Hi Lili,
There's a lot of extra information that would be useful to us to be able to
help you with an answer. Perhaps you could upload an image of a slice to
imgur (see the header to this email), and that will provide us with some of
that (cell size, tissue/culture type, staining pattern, signal to noise
ratio, etc.)
Different tools will work with different efficacy depending on the
parameters I briefly listed above, but probably using FIJI (FIJI.sc) is the
way to go.
If you don't have any experience in programming or image processing, it's
not going to be quick this first time. If you have the intention to do a
similar experiment again and again, it is worth investing the time now to
learn how to automate the analysis, even if only partially, as it will save
you hours of mind-numbing analysis in the future.
Best wishes,
Chris
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From: Confocal Microscopy List <
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Sent: Wednesday, May 10, 2017 9:37 AM
To:
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Subject: measure vacuole and cell volume
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Hi all,
I have hundreds of zess confocal z stack images. Now I need to measure the volume of the cell and volume of structures inside the cell. Are there softwares or quick way to do it? Thanks!
Best regards,
LILI ZHANG