Posted by
mmodel on
URL: http://confocal-microscopy-list.275.s1.nabble.com/Release-of-Bio-Formats-5-7-1-tp7587321p7587332.html
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That helps, thank you
-----Original Message-----
From: Confocal Microscopy List [mailto:
[hidden email]] On Behalf Of Sebastien Besson (Staff)
Sent: Thursday, September 21, 2017 3:42 AM
To:
[hidden email]
Subject: Re: Release of Bio-Formats 5.7.1
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Hi Mike,
thanks for raising the issue.
The user-facing landing page for the latest Bio-Formats is available at
https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.openmicroscopy.org%2Fbio-formats%2Fdownloads&data=01%7C01%7Cmmodel%40KENT.EDU%7C11b304790501456714f708d500c45c4e%7Ce5a06f4a1ec44d018f73e7dd15f26134%7C1&sdata=9CeWUAp78%2BNbPIqDQKvcovdkYm3G4lD6ZZ7ami%2By%2BMk%3D&reserved=0. This page includes a shortlist of the most common Bio-Formats packages: ImageJ, command-line tools, MATLAB/Octave.
Since the release of the new website, the
https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdownloads.openmicroscopy.org&data=01%7C01%7Cmmodel%40KENT.EDU%7C11b304790501456714f708d500c45c4e%7Ce5a06f4a1ec44d018f73e7dd15f26134%7C1&sdata=VH5t0bOMgalJSS7UL13jhL5Vj5CYD%2BopzHHLiuY0mfE%3D&reserved=0domain now only contain raw listing of all artifacts associated a particular release of Bio-Formats.
Does that answer your question or did you have a more specific use case in mind?
Sebastien
On 20 Sep 2017, at 16:04, MODEL, MICHAEL <
[hidden email]<mailto:
[hidden email]>> wrote:
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The new website for downloading is a little tricky to navigate. There used to be a single jar file and now there are lots of options. Could you provide simple instructions for the average user? Thank you
Mike
-----Original Message-----
From: Confocal Microscopy List [mailto:
[hidden email]] On Behalf Of David Gault (Staff)
Sent: Wednesday, September 20, 2017 10:47 AM
To:
[hidden email]<mailto:
[hidden email]>
Subject: Release of Bio-Formats 5.7.1
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Dear all,
Today we are releasing Bio-Formats 5.7.1 which includes the following changes:
File format fixes and improvements:
* Nikon NIS-Elements ND2
* improved parsing of Z position values
* LaVision Imspector
* corrected the value of time per FLIM channel
* fixed a bug which saw the Z and T dimensions swapped
* fixed a divide by zero exception
* added a fix for incorrect time-base and number of channels
* TIFF
* added support for handling files with a FillOrder of 2 in which the bits in each byte are reversed
* improved support for multi-channel ImageJ TIFF files greater than 4GB in size
Performance improvements:
* improved TIFF performance by using non-regexp String replacement (thanks to Thushara Wijeratna *)
* improved TIFF handling of Strings for large metadata (thanks to T. Alexander Popiel *)
* Allen Institute for Cell Science
Documentation improvements:
* updated documentation to reference support for ImageJ TIFFs
* added links to format options page to user and developer index pages
Full details can be found at
https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.openmicroscopy.org%2F%2Fbio-formats%2F5.7.1%2Fabout%2Fwhats-new.html&data=01%7C01%7Cmmodel%40KENT.EDU%7C8c89407ae2d94b39caa208d50037cb44%7Ce5a06f4a1ec44d018f73e7dd15f26134%7C1&sdata=hxL0gd0s5EM2%2FFIcBYCaMsf5NJtfuYI4ilKPgTZpRfw%3D&reserved=0The software is available at:
https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fdownloads.openmicroscopy.org%2Fbio-formats%2F5.7.1&data=01%7C01%7Cmmodel%40KENT.EDU%7C8c89407ae2d94b39caa208d50037cb44%7Ce5a06f4a1ec44d018f73e7dd15f26134%7C1&sdata=PRhg5sf3kaply%2FeZDYTepb6bWyYRnbb2KM7Jpii8eHM%3D&reserved=0and will shortly be available from the Java-8 update site for Fiji users.
Any problems or comments, please use the OME Forums or mailing lists:
https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.openmicroscopy.org%2Fsupport&data=01%7C01%7Cmmodel%40KENT.EDU%7C8c89407ae2d94b39caa208d50037cb44%7Ce5a06f4a1ec44d018f73e7dd15f26134%7C1&sdata=RnfijkQX0ov%2BhSK3SU07ovidxZ%2Bw3PVG0nkouh377Ak%3D&reserved=0Regards,
The OME Team
The University of Dundee is a registered Scottish Charity, No: SC015096
The University of Dundee is a registered Scottish Charity, No: SC015096