Re: Janelia conference for imaging cores - some pointers

Posted by Roland Nitschke on
URL: http://confocal-microscopy-list.275.s1.nabble.com/Janelia-conference-for-imaging-cores-some-pointers-tp7587488p7587512.html

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The German BioImaging Network  is one of those Europian national
networks mentioned by Alison.

You can find extensive information about us here:
http://www.germanbioimaging.org

We have published in 2016 an open access paper about: Advanced light
microscopy core facilities: Balancing service, science and career ,
which covers many of the important aspects raised before by others.

You can download the paper at:
http://onlinelibrary.wiley.com/doi/10.1002/jemt.22648/abstract

I am one of the founders and coordinators of this German network and
Elisa Ferrando-May is an invited speaker at the Janelia meeting.

I might also come over to the meeting if I manage to put together an
attractive abstract about the local trinational imaging network 
(https://www.miap.eu)  that I have set-up here in Freiburg.

Thanks Alison also to mention the ELMI meeting, which is clearly a great
place for exchange beetween core facilities in Europe.

All the best

Roland





___________________________

Albert-Ludwigs-University Freiburg
Microscopy and Image Analysis Platform (MIAP)
Life Imaging Center (LIC) in ZBSA
Dr. Roland Nitschke
Habsburgerstr.49
D-79104 Freiburg
Germany
___________________________
E-mail: [hidden email]
phone: 49-761-2032934 or 2902
fax: 49-761-2032941
https://miap.eu/miap-units/life-imaging-center-lic/

Am 01.11.2017 um 19:12 schrieb Alison North:

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>
> Dear Kate,
>
> I think you have raised a number of excellent suggestions here.
> Regarding your last one in particular, I feel the need to point out
> that we in the USA are WAY behind many other countries in the area of
> networking, particularly when it comes to sharing equipment.  I don't
> know whether you are familiar with the Euro-BioImaging project:
>
> http://www.eurobioimaging.eu/
>
> but this is a very interesting and laudable attempt to solve exactly
> the problem you refer to in accessing uncommon equipment. Many of the
> European countries (also, I believe, Australia) have also established
> their own country-wide networks, long before the Euro-BioImaging
> network was established.  These matters are discussed every year at
> the wonderful ELMI meeting (European Light Microscopy Initiative),
> which, in my opinion, is the most useful meeting out there for
> microscopy facility managers.  (Also jolly good fun and held in a
> fantastic location every year - thank you ELMI meeting organisers past
> and present!)  Personally, I would like to see a similar network
> established in the USA, but the sheer enormity of this task is rather
> daunting.  Maybe we could first approach it on a state or regional
> level?  This is certainly something worth discussing.
>
> All the best,
> Alison
>
>
> On 11/1/2017 2:00 PM, Kate Luby-Phelps wrote:
>> *****
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>>
>> Post images on
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>> and include the link in your posting.
>> *****
>>
>> I had not really thought much about networking with other core
>> facilities until I saw the announcement of the conference. For me,
>> the confocal listserv essentially fills this niche as we get to pick
>> each others’ brains. However, in thinking about it more, it seems to
>> me there are several ways in which a formal networking effort might
>> be helpful: 1) Since all cores large and small will share some of the
>> same challenges, perhaps identification of these areas and formation
>> of focused subnetworks or topical working groups could be useful. For
>> example, I have made some stabs at solving the need for deconvolution
>> of large volumes from slide scanners and tiled confocal z stacks but
>> have not had the time or the resources to pursue this to an endpoint.
>> If others are in the same boat, perhaps we each have different pieces
>> of the puzzle and sharing them could speed up the process of
>> eliminating what doesn’t work or at least defining what the
>> roadblocks are and then having group members take on well-defined,
>> manageable tasks to try to move things forward for everyone. As
>> already mentioned, another example of a challenge we all face is
>> finding money to replace aging instrumentation and to acquire cutting
>> edge technology. Here a network for mentoring people who want to
>> apply for S10 grants could be helpful. A third possibility is a
>> network that could serve as a consortium for sharing of resources.
>> For software, this is not too difficult, as witnessed by the success
>> of ImageJ/FiJi and CellProfiler. Would it be possible to facilitate
>> access to instrumentation as well? For example, if I have an
>> occasional need for STED but do not own one and do not have a large
>> enough user group to apply for an S10, can I locate a facility that
>> has it and somehow arrange to have my sample viewed? I realize this
>> idea raises all kinds of logistical issues, including recharge costs,
>> travel costs, shipping of samples, etc., but perhaps its feasibility
>> is worth discussing.
>>
>> A conference that attempts to promote and formalize these types of
>> interactions would be worth attending.
>>
>> Kate Luby-Phelps
>> Director, Live Cell Imaging Facility and Electron Microscopy Core
>> Facility
>> UT Southwestern Medical Center
>> Dallas, TX
>