Re: splitting by C-focal Assistant
Locked
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Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
Thanks for that. It really is simple - open the
series. Select
Image, then side by side merge, then series and check
'all images'. Select a file type and name and it's
done.
Guy
Optical Imaging Techniques in Cell Biology From: Michal Opas [mailto:[hidden email]] Sent: Thursday, 15 May 2008 10:13 PM To: Guy Cox Subject: RE: splitting by C-focal Ass Michal PS Thanks for doing it. M. At 09:25 PM 14/05/2008, you wrote: Well, I just checked the manual and it said it would do it. Dr. Michal Opas Professor Department of Laboratory Medicine and Pathobiology University of Toronto 1 King's College Circle Medical Sciences Building, room 6326 Toronto, Ontario, M5S 1A8 Canada °°°°°°°°°°°°° phone: (416) 978-8947 (laboratory) (416) 971-2140 (office) fax: (416) 978-5959 email: [hidden email] homepage: http://www.utoronto.ca/mocell No virus found in this incoming message. No virus found in this outgoing message. |
 
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Eric Scarfone |
Re: splitting by C-focal Assistant
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Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal Bummer, CAS doesn't seem to run on windows XP, does it? Eric ----- Original Message ----- From: Guy Cox <[hidden email]> Date: Thursday, May 15, 2008 3:48 pm Subject: Re: splitting by C-focal Assistant To: [hidden email] > Search the CONFOCAL archive at > http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal > > Thanks for that. It really is simple - open the series. Select > Image, then side by side merge, then series and check > 'all images'. Select a file type and name and it's done. > > > Guy > > > > Optical Imaging Techniques in Cell Biology > by Guy Cox CRC Press / Taylor & Francis > HYPERLINK > "http://www.guycox.com/optical.htm"http://www.guycox.com/optical.htm_ > Associate Professor Guy Cox, MA, DPhil(Oxon) > Electron Microscope Unit, Madsen Building F09, > University of Sydney, NSW 2006 > ______________________________________________ > Phone +61 2 9351 3176 Fax +61 2 9351 7682 > Mobile 0413 281 861 > ______________________________________________ > HYPERLINK "http://www.guycox.net/"http://www.guycox.net > > > > _____ > > From: Michal Opas [mailto:[hidden email]] > Sent: Thursday, 15 May 2008 10:13 PM > To: Guy Cox > Subject: RE: splitting by C-focal Ass > > > There you go! > Michal > > PS > Thanks for doing it. > M. > > At 09:25 PM 14/05/2008, you wrote: > > > Well, I just checked the manual and it said it would do it. > (To be precise, it said it would convert them to merged > RGB, which I presume would meet most requirements). > I'll just have to dig out some old Bio-Rad files and test it > with the actual program. Trouble is I rarely used the > side-by side format. Do you have a small stack (3 or > 4 images) you could mail me? > > > Guy > > > Optical Imaging Techniques in Cell Biology > by Guy Cox CRC Press / Taylor & Francis > HYPERLINK > "http://www.guycox.com/optical.htm"http://www.guycox.com/optical.htm_ > Associate Professor Guy Cox, MA, DPhil(Oxon) > Electron Microscope Unit, Madsen Building F09, > University of Sydney, NSW 2006 > ______________________________________________ > Phone +61 2 9351 3176 Fax +61 2 9351 7682 > Mobile 0413 281 861 > ______________________________________________ > HYPERLINK "http://www.guycox.net/"http://www.guycox.net > > > > _____ > > From: Michal Opas [HYPERLINK "mailto:[hidden email]" > mailto:[hidden email]] > Sent: Thursday, 15 May 2008 5:41 AM > To: Guy Cox > Subject: splitting by C-focal Ass > > > > Hi Guy, > > > > I just checked ver 4.04 (I presume it's the latest) of cfocal > assistant and I do not seem to be able to do split neither stack > nor single side-by-side image. > Am I missing something? (which is quite possible) > Thanks! > Michal > > > > > > I just checked, and it seems that Confocal Assistant does indeed > also split those side-by-side files. So now Eric has at least 3 > options! > Guy > > > -----Original Message----- > From: Confocal Microscopy List [ HYPERLINK > "mailto:[hidden email]"mailto:[hidden email] > Behalf Of Jerry Sedgewick > Sent: Wednesday, 14 May 2008 1:59 AM > To: [hidden email] > Subject: Re: old Biorad format > > Search the CONFOCAL archive at > HYPERLINK "http://listserv.acsu.buffalo.edu/cgi- > bin/wa?S1=confocal"http://listserv.acsu.buffalo.edu/cgi-bin/wa? S1=confocal > > Hi Eric, > > I suspect that you are talking about Confocal Assistant, written > for > opening PIC files, etc. That can be downloaded at our site: > HYPERLINK > "http://bipl.umn.edu/downloads"http://bipl.umn.edu/downloads. > Jerry > > > Eric Scarfone wrote: > > Search the CONFOCAL archive at > > HYPERLINK "http://listserv.acsu.buffalo.edu/cgi- > bin/wa?S1=confocal"http://listserv.acsu.buffalo.edu/cgi-bin/wa? > > > > Hello all > > I vaguely recall a small program that would cut out the infamous > > original biorad format (MRC600, 2 channels side by side on the > same > > image) into one two file stacks (one for each channel). Or was > it a > > patch in Imaris or another software? > > If this exists can somebody point it out? > > Amicalement > > Erics > > > > Eric Scarfone, PhD, CNRS, > > Center for Hearing and communication Research > > Department of Clinical Neuroscience > > Karolinska Institutet > > > > Postal Address: > > CFH, M1:02 > > Karolinska Hospital, > > SE-171 76 Stockholm, Sweden > > > > Work: +46 (0)8-517 79343, > > Cell: +46 (0)70 888 2352 > > Fax: +46 (0)8-301876 > > > > email: [hidden email] > > HYPERLINK "http://www.ki.se/cfh/"http://www.ki.se/cfh/ > > > > > > > > > > > --- Get FREE High Speed Internet from USFamily.Net! -- > HYPERLINK "http://www.usfamily.net/mkt- > freepromo.html"http://www.usfamily.net/mkt-freepromo.html --- > > No virus found in this incoming message. > Checked by AVG. > Version: 7.5.524 / Virus Database: 269.23.16/1429 - Release Date: > 12/05/2008 6:14 PM > > > > > Dr. Michal Opas > Professor > Department of Laboratory Medicine and Pathobiology > University of Toronto > 1 King's College Circle > Medical Sciences Building, room 6326 > Toronto, Ontario, M5S 1A8 Canada > > °°°°°°°°°°°°° > phone: (416) 978-8947 (laboratory) > (416) 971-2140 (office) > fax: (416) 978-5959 > email: [hidden email] > homepage: HYPERLINK > "http://www.utoronto.ca/mocell"http://www.utoronto.ca/mocell > > No virus found in this incoming message. > Checked by AVG. > Version: 7.5.524 / Virus Database: 269.23.16/1431 - Release Date: > 13/05/2008 7:55 PM > > No virus found in this outgoing message. > Checked by AVG. > Version: 7.5.524 / Virus Database: 269.23.16/1433 - Release Date: > 14/05/2008 4:44 PM > > > Dr. Michal Opas > Professor > Department of Laboratory Medicine and Pathobiology > University of Toronto > 1 King's College Circle > Medical Sciences Building, room 6326 > Toronto, Ontario, M5S 1A8 Canada > > °°°°°°°°°°°°° > phone: (416) 978-8947 (laboratory) > (416) 971-2140 (office) > fax: (416) 978-5959 > email: [hidden email] > homepage: HYPERLINK > "http://www.utoronto.ca/mocell"http://www.utoronto.ca/mocell > > > > > No virus found in this incoming message. > Checked by AVG. > Version: 7.5.524 / Virus Database: 269.23.16/1433 - Release Date: > 14/05/2008 4:44 PM > > > > No virus found in this outgoing message. > Checked by AVG. > Version: 7.5.524 / Virus Database: 269.23.16/1433 - Release Date: > 14/05/2008 4:44 PM > > |
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Dale Callaham |
Re: splitting by C-focal Assistant
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Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal What problem does it give? Does the program open at all? I know that even for Win98/Win2k that files to be opened had to have a rather short path - not too many directories deep or long names - I think the # of chars allocated for the path+filename was short. And saving files you have to stick to the 8+3 name format since it was a Win3.1 program. Dale Eric Scarfone wrote: > Search the CONFOCAL archive at > http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal > > Bummer, CAS doesn't seem to run on windows XP, does it? > > Eric > > ----- Original Message ----- > From: Guy Cox <[hidden email]> > Date: Thursday, May 15, 2008 3:48 pm > Subject: Re: splitting by C-focal Assistant > To: [hidden email] > >> Search the CONFOCAL archive at >> http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal >> >> Thanks for that. It really is simple - open the series. Select >> Image, then side by side merge, then series and check >> 'all images'. Select a file type and name and it's done. >> >> >> Guy >> >> >> >> Optical Imaging Techniques in Cell Biology >> by Guy Cox CRC Press / Taylor & Francis >> HYPERLINK >> "http://www.guycox.com/optical.htm"http://www.guycox.com/optical.htm_ > _____________________________________________ >> Associate Professor Guy Cox, MA, DPhil(Oxon) >> Electron Microscope Unit, Madsen Building F09, >> University of Sydney, NSW 2006 >> ______________________________________________ >> Phone +61 2 9351 3176 Fax +61 2 9351 7682 >> Mobile 0413 281 861 >> ______________________________________________ >> HYPERLINK "http://www.guycox.net/"http://www.guycox.net >> >> >> >> _____ >> >> From: Michal Opas [mailto:[hidden email]] >> Sent: Thursday, 15 May 2008 10:13 PM >> To: Guy Cox >> Subject: RE: splitting by C-focal Ass >> >> >> There you go! >> Michal >> >> PS >> Thanks for doing it. >> M. >> >> At 09:25 PM 14/05/2008, you wrote: >> >> >> Well, I just checked the manual and it said it would do it. >> (To be precise, it said it would convert them to merged >> RGB, which I presume would meet most requirements). >> I'll just have to dig out some old Bio-Rad files and test it >> with the actual program. Trouble is I rarely used the >> side-by side format. Do you have a small stack (3 or >> 4 images) you could mail me? >> >> >> Guy >> >> >> Optical Imaging Techniques in Cell Biology >> by Guy Cox CRC Press / Taylor & Francis >> HYPERLINK >> "http://www.guycox.com/optical.htm"http://www.guycox.com/optical.htm_ > _____________________________________________ >> Associate Professor Guy Cox, MA, DPhil(Oxon) >> Electron Microscope Unit, Madsen Building F09, >> University of Sydney, NSW 2006 >> ______________________________________________ >> Phone +61 2 9351 3176 Fax +61 2 9351 7682 >> Mobile 0413 281 861 >> ______________________________________________ >> HYPERLINK "http://www.guycox.net/"http://www.guycox.net >> >> >> >> _____ >> >> From: Michal Opas [HYPERLINK "mailto:[hidden email]" >> mailto:[hidden email]] >> Sent: Thursday, 15 May 2008 5:41 AM >> To: Guy Cox >> Subject: splitting by C-focal Ass >> >> >> >> Hi Guy, >> >> >> >> I just checked ver 4.04 (I presume it's the latest) of cfocal >> assistant and I do not seem to be able to do split neither stack >> nor single side-by-side image. >> Am I missing something? (which is quite possible) >> Thanks! >> Michal >> >> >> >> >> >> I just checked, and it seems that Confocal Assistant does indeed >> also split those side-by-side files. So now Eric has at least 3 >> options! >> Guy >> >> >> -----Original Message----- >> From: Confocal Microscopy List [ HYPERLINK >> "mailto:[hidden email]"mailto:[hidden email] > O.EDU] On >> Behalf Of Jerry Sedgewick >> Sent: Wednesday, 14 May 2008 1:59 AM >> To: [hidden email] >> Subject: Re: old Biorad format >> >> Search the CONFOCAL archive at >> HYPERLINK "http://listserv.acsu.buffalo.edu/cgi- >> bin/wa?S1=confocal"http://listserv.acsu.buffalo.edu/cgi-bin/wa? > S1=confocal >> Hi Eric, >> >> I suspect that you are talking about Confocal Assistant, written >> for >> opening PIC files, etc. That can be downloaded at our site: >> HYPERLINK >> "http://bipl.umn.edu/downloads"http://bipl.umn.edu/downloads. >> Jerry >> >> >> Eric Scarfone wrote: >>> Search the CONFOCAL archive at >>> HYPERLINK "http://listserv.acsu.buffalo.edu/cgi- >> bin/wa?S1=confocal"http://listserv.acsu.buffalo.edu/cgi-bin/wa? > S1=confocal >>> Hello all >>> I vaguely recall a small program that would cut out the infamous >>> original biorad format (MRC600, 2 channels side by side on the >> same >>> image) into one two file stacks (one for each channel). Or was >> it a >>> patch in Imaris or another software? >>> If this exists can somebody point it out? >>> Amicalement >>> Erics >>> >>> Eric Scarfone, PhD, CNRS, >>> Center for Hearing and communication Research >>> Department of Clinical Neuroscience >>> Karolinska Institutet >>> >>> Postal Address: >>> CFH, M1:02 >>> Karolinska Hospital, >>> SE-171 76 Stockholm, Sweden >>> >>> Work: +46 (0)8-517 79343, >>> Cell: +46 (0)70 888 2352 >>> Fax: +46 (0)8-301876 >>> >>> email: [hidden email] >>> HYPERLINK "http://www.ki.se/cfh/"http://www.ki.se/cfh/ >>> >>> >>> >> >> >> >> --- Get FREE High Speed Internet from USFamily.Net! -- >> HYPERLINK "http://www.usfamily.net/mkt- >> freepromo.html"http://www.usfamily.net/mkt-freepromo.html --- >> >> No virus found in this incoming message. >> Checked by AVG. >> Version: 7.5.524 / Virus Database: 269.23.16/1429 - Release Date: >> 12/05/2008 6:14 PM >> >> >> >> >> Dr. Michal Opas >> Professor >> Department of Laboratory Medicine and Pathobiology >> University of Toronto >> 1 King's College Circle >> Medical Sciences Building, room 6326 >> Toronto, Ontario, M5S 1A8 Canada >> >> °°°°°°°°°°°°° >> phone: (416) 978-8947 (laboratory) >> (416) 971-2140 (office) >> fax: (416) 978-5959 >> email: [hidden email] >> homepage: HYPERLINK >> "http://www.utoronto.ca/mocell"http://www.utoronto.ca/mocell >> >> No virus found in this incoming message. >> Checked by AVG. >> Version: 7.5.524 / Virus Database: 269.23.16/1431 - Release Date: >> 13/05/2008 7:55 PM >> >> No virus found in this outgoing message. >> Checked by AVG. >> Version: 7.5.524 / Virus Database: 269.23.16/1433 - Release Date: >> 14/05/2008 4:44 PM >> >> >> Dr. Michal Opas >> Professor >> Department of Laboratory Medicine and Pathobiology >> University of Toronto >> 1 King's College Circle >> Medical Sciences Building, room 6326 >> Toronto, Ontario, M5S 1A8 Canada >> >> °°°°°°°°°°°°° >> phone: (416) 978-8947 (laboratory) >> (416) 971-2140 (office) >> fax: (416) 978-5959 >> email: [hidden email] >> homepage: HYPERLINK >> "http://www.utoronto.ca/mocell"http://www.utoronto.ca/mocell >> >> >> >> >> No virus found in this incoming message. >> Checked by AVG. >> Version: 7.5.524 / Virus Database: 269.23.16/1433 - Release Date: >> 14/05/2008 4:44 PM >> >> >> >> No virus found in this outgoing message. >> Checked by AVG. >> Version: 7.5.524 / Virus Database: 269.23.16/1433 - Release Date: >> 14/05/2008 4:44 PM >> >> |
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Eric Scarfone |
Re: splitting by C-focal Assistant
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In reply to this post by Guy Cox
Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal it is actually worse than that, it doesn't install at all. I get a message saying "the image file .....setup402.exe is valid but is for a machine type other than the current machine" never had this kind of message! Eric Scarfone, PhD, CNRS, Center for Hearing and communication Research Department of Clinical Neuroscience Karolinska Institutet Postal Address: CFH, M1:02 Karolinska Hospital, SE-171 76 Stockholm, Sweden Work: +46 (0)8-517 79343, Cell: +46 (0)70 888 2352 Fax: +46 (0)8-301876 email: [hidden email] http://www.ki.se/cfh/ |
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Brotchie, Daniel |
Re: splitting by C-focal Assistant (CAS on XP)
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Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal Hi, To install Confocal Assistant on XP: - Make a directory c:\cas - Copy the unzipped Confocal Assistant files to it i.e. CAS.EXE, CAS.HLP, _ISREG16.DLL, README.WRI - make a shortcut to CAS.EXE and move the shortcut to your desktop - click on the shortcut - remember Dale's advice about directory structure, length of file names/directory names - BTW - I think the merge facility of CAS only works if the files to be merged are stored in root c:\cas Daniel University of Liverpool -----Original Message----- From: Confocal Microscopy List [mailto:[hidden email]] On Behalf Of Eric Scarfone Sent: 15 May 2008 16:51 To: [hidden email] Subject: Re: splitting by C-focal Assistant Search the CONFOCAL archive at http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal it is actually worse than that, it doesn't install at all. I get a message saying "the image file .....setup402.exe is valid but is for a machine type other than the current machine" never had this kind of message! Eric Scarfone, PhD, CNRS, Center for Hearing and communication Research Department of Clinical Neuroscience Karolinska Institutet Postal Address: CFH, M1:02 Karolinska Hospital, SE-171 76 Stockholm, Sweden Work: +46 (0)8-517 79343, Cell: +46 (0)70 888 2352 Fax: +46 (0)8-301876 email: [hidden email] http://www.ki.se/cfh/ |
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In reply to this post by Guy Cox
Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
As Jureck says, CAS runs just fine under XP. If you
are working with
old SOM or COMOS files you won't have a problem with name
length
but later OS2 or NT files may be less easy.
However, having looked at the way the installer is said to
work I do
fear that it may not work under XP. I've never tried
it since I always
put it in manually - it doesn't need the installer.
If you cannot get the
installer to work just copy CAS.exe, _ISREG16.dll,
CAS.hlp,
DEILS1.isu and readme.wri into a folder of your
choice. You can
then create a link to the desktop and set file association
manually.
Haven't yet tried it under Vista.
Guy
Optical Imaging Techniques in Cell Biology From: Jurek Dobrucki [mailto:[hidden email]] Sent: Friday, 16 May 2008 12:16 AM To: [hidden email] Cc: Guy Cox Subject: Fwd: splitting by C-focal Assistant ---------- Forwarded message ---------- From: Jurek Dobrucki <[hidden email]> Date: Thu, May 15, 2008 at 4:06 PM Subject: Re: splitting by C-focal Assistant To: Confocal Microscopy List <[hidden email]> Eric, It does, but the file names have to be short, and path as well, Jurek On Thu, May 15, 2008 at 3:59 PM, Eric Scarfone <[hidden email]>
wrote: Search the CONFOCAL archive at Jurek Dobrucki, Ph.D., D.Sc. Associate Professor of Biophysics Head, Division of Cell Biophysics Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University ul. Gronostajowa 7 30-387 Krakow, Poland tel. +48 12 664 6382 [hidden email] http://helios.mol.uj.edu.pl -- Jurek Dobrucki, Ph.D., D.Sc. Associate Professor of Biophysics Head, Division of Cell Biophysics Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University ul. Gronostajowa 7 30-387 Krakow, Poland tel. +48 12 664 6382 [hidden email] http://helios.mol.uj.edu.pl No virus found in this incoming message. No virus found in this outgoing message. |
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