Software/program

[Sarah Kefayati]

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hello all,

Is there any deconvolution software or program that I can use in order
to do the deconvolution with in situ PSFs?

Thanks in advanced
Sarah

[JOEL B. SHEFFIELD]

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

You can take a look at the deconvolution plugins that are available
for ImageJ.  There is a set by Robert Dougherty that are quite
impressive.

Joel


Date sent:       Sat, 26 Apr 2008 14:11:13 -0400
Send reply to:   Confocal Microscopy List
<[hidden email]>
From:           Sarah Kefayati <[hidden email]>
Subject:         Software/program
To:             [hidden email]

> Search the CONFOCAL archive at
> http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal
>
> Hello all,
>
> Is there any deconvolution software or program that I can use in order
> to do the deconvolution with in situ PSFs?
>
> Thanks in advanced
> Sarah

Joel B. Sheffield, Ph.D
Department of Biology
Temple University
Philadelphia, PA 19122
Voice: 215 204 8839
e-mail: [hidden email]
URL:  http://astro.temple.edu/~jbs

[Peter Humphreys]

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

There's a couple of new plugins for imageJ, I've tried the spectral version,
works quite well.
http://piotr.wendykier.googlepages.com/deconvolution

I generated the psfs using bob dougherty's psf diffraction plugin.


Peter Humphreys

Imaging Facility Manager

Wellcome Trust Centre for Stem Cell Research

University of Cambridge

Tennis Court Road

Cambridge

CB2 1QR


-----Original Message-----
From: Confocal Microscopy List [mailto:[hidden email]] On
Behalf Of Sarah Kefayati
Sent: 26 April 2008 19:11
To: [hidden email]
Subject: Software/program

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hello all,

Is there any deconvolution software or program that I can use in order
to do the deconvolution with in situ PSFs?

Thanks in advanced
Sarah

[Kevin Ryan-2]

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

AutoQuant can use experimental or theoretical PSF's, including blind
deconvolution to discover an unknown point spread function.

        http://www.mediacy.com/index.aspx?page=AutoDeblurVisualize

Of course, I'm a bit biased, since we write the stuff - but it works
quite well.

Kevin Ryan
Media Cybernetics, Inc.


-----Original Message-----
From: Confocal Microscopy List [mailto:[hidden email]] On
Behalf Of Sarah Kefayati
Sent: Saturday, April 26, 2008 2:11 PM
To: [hidden email]
Subject: Software/program

Search the CONFOCAL archive at
http://listserv.acsu.buffalo.edu/cgi-bin/wa?S1=confocal

Hello all,

Is there any deconvolution software or program that I can use in order
to do the deconvolution with in situ PSFs?

Thanks in advanced
Sarah