*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy*****
Hi, I would use Amira for this. You can set landmarks based on structures and adjust the data sets until you are satisfied.
http://www.vsg3d.com/amira/overviewIf I remember correctly, similar functionality exists in Velocity and Imaris.
Cheers,
Brian D Armstrong PhD
Associate Research Professor
Director, Light Microscopy Core
Beckman Research Institute
City of Hope
Dept of Neuroscience
1450 E Duarte Rd
Duarte, CA 91010
626-256-4673 x62872
-----Original Message-----
From: Confocal Microscopy List [mailto:
[hidden email]] On Behalf Of Ekaterina PAPUSHEVA
Sent: Friday, July 19, 2013 1:02 AM
To:
[hidden email]
Subject: Volume stitching from phzsical tissue sections?
*****
To join, leave or search the confocal microscopy listserv, go to:
http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy*****
Dear all,
we have confocal stacks from several tissue sections, that are slightly rotated relative to each other. There are no overlapping landmarks, except matching tissue boundaries. We would like to stitch them in a single volume, after correcting the drift
does someone know a good software, that can help with such semi/manual stitching?
best regards,
Ekaterina
---------------------------------------------------------------------
*SECURITY/CONFIDENTIALITY WARNING:
This message and any attachments are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wish to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender. (fpc5p)
---------------------------------------------------------------------
Locked
