online tutorials?
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To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hello, I am looking for online training material in microscopy, image processing, and image analysis that I can recommend. I am aware of the great material at ibiology.org. Does anyone know of additional material that steps a student through the information, potentially with questions to help them focus and test themselves or training material for image processing? Thank you. Stay safe and sane. Ted |
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To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Dear Ted, we listed some on our facility page. https://bif.pages.ist.ac.at/2020/03/15/bif-off-campus-training-resources/ best Gabriel ________________________________ From: Confocal Microscopy List <[hidden email]> on behalf of Ted Usdin <[hidden email]> Sent: Tuesday, March 24, 2020 1:49:04 PM To: [hidden email] Subject: online tutorials? ***** To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hello, I am looking for online training material in microscopy, image processing, and image analysis that I can recommend. I am aware of the great material at ibiology.org. Does anyone know of additional material that steps a student through the information, potentially with questions to help them focus and test themselves or training material for image processing? Thank you. Stay safe and sane. Ted |
 
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Leandro Lemgruber Soares |
Re: online tutorials?
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In reply to this post by Ted Usdin
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To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hi Ted RMS is compiling a list with sites with microscopy webinars, online training etc… https://www.rms.org.uk/study-read/news-listing-page/online-microscopy-talks-list.html Leandro — Leandro Lemgruber, PhD FRMS Glasgow Imaging Facility Institute of Infection, Immunity and Inflammation Sir Graeme Davis Building - room B621 University of Glasgow 120 University Place Glasgow, G12 8TA UK email: [hidden email]<mailto:[hidden email]> Tel: +44 141 330 8282 Twitter: @iii_imaging GIF webpage: https://www.gla.ac.uk/researchinstitutes/iii/facilities/imagingtechnologies/ The University of Glasgow, charity number SC004401 The Institute of Infection, Immunity & Inflammation encourages flexible working, so this email may have been sent outside normal working hours. A response is not expected until you return to work. On 24 Mar 2020, at 12:49, Ted Usdin <[hidden email]<mailto:[hidden email]>> wrote: ***** To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hello, I am looking for online training material in microscopy, image processing, and image analysis that I can recommend. I am aware of the great material at ibiology.org. Does anyone know of additional material that steps a student through the information, potentially with questions to help them focus and test themselves or training material for image processing? Thank you. Stay safe and sane. Ted |
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In reply to this post by Ted Usdin
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To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hi Ted, There is a really good thread going on in the image.sc forum that is collecting resources for this kind of thing: https://forum.image.sc/t/bioimage-analysis-recommended-reading-and-viewing/28051 Best regards, Trevor --- Trevor Lancon Aivia Applications Specialist – Eastern US [hidden email] | (832) 490-4617 -----Original Message----- From: Confocal Microscopy List <[hidden email]> On Behalf Of Ted Usdin Sent: Tuesday, March 24, 2020 7:49 AM To: [hidden email] Subject: online tutorials? ***** To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hello, I am looking for online training material in microscopy, image processing, and image analysis that I can recommend. I am aware of the great material at ibiology.org. Does anyone know of additional material that steps a student through the information, potentially with questions to help them focus and test themselves or training material for image processing? Thank you. Stay safe and sane. Ted |
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In reply to this post by Leandro Lemgruber Soares
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To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** We now have a great line up of speakers for our on-line conference on microscopy. Please see the updated program here http://www.aurox.co.uk/aurox-confocal-microscope-conference.php I hope some of you will have the time to join us Stay healthy and safe Best wishes from all at Aurox! Dr Phillipa Timmins Head of Sales Aurox Ltd Culham Science Centre Abingdon Oxfordshire OX14 3DB Tel: 07585 676763 -----Original Message----- From: Confocal Microscopy List <[hidden email]> On Behalf Of Leandro Lemgruber Soares Sent: 24 March 2020 12:55 To: [hidden email] Subject: Re: online tutorials? ***** To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hi Ted RMS is compiling a list with sites with microscopy webinars, online training etc… https://www.rms.org.uk/study-read/news-listing-page/online-microscopy-talks-list.html Leandro — Leandro Lemgruber, PhD FRMS Glasgow Imaging Facility Institute of Infection, Immunity and Inflammation Sir Graeme Davis Building - room B621 University of Glasgow 120 University Place Glasgow, G12 8TA UK email: [hidden email]<mailto:[hidden email]> Tel: +44 141 330 8282 Twitter: @iii_imaging GIF webpage: https://www.gla.ac.uk/researchinstitutes/iii/facilities/imagingtechnologies/ The University of Glasgow, charity number SC004401 The Institute of Infection, Immunity & Inflammation encourages flexible working, so this email may have been sent outside normal working hours. A response is not expected until you return to work. On 24 Mar 2020, at 12:49, Ted Usdin <[hidden email]<mailto:[hidden email]>> wrote: ***** To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hello, I am looking for online training material in microscopy, image processing, and image analysis that I can recommend. I am aware of the great material at ibiology.org. Does anyone know of additional material that steps a student through the information, potentially with questions to help them focus and test themselves or training material for image processing? Thank you. Stay safe and sane. Ted |
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In reply to this post by Ted Usdin
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To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Dear Ted, please find below the link to a MOOC covering basic principles of image processing and analysis for life scientist. https://courseware.epfl.ch/courses/course-v1:EPFL+IPA4LS+2019_t3/about Best Arne -----Original Message----- From: Confocal Microscopy List <[hidden email]> On Behalf Of Ted Usdin Sent: Dienstag, 24. März 2020 13:49 To: [hidden email] Subject: online tutorials? ***** To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hello, I am looking for online training material in microscopy, image processing, and image analysis that I can recommend. I am aware of the great material at ibiology.org. Does anyone know of additional material that steps a student through the information, potentially with questions to help them focus and test themselves or training material for image processing? Thank you. Stay safe and sane. Ted |
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In reply to this post by Ted Usdin
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To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** Hi Ted and others We, at the Live Cell Imaging facility in Sweden have produced a few videos over the years. You can find them on our website<https://ki.se/en/bionut/teaching-material>. There are 2 types: * Some that are directly targeted at training our users to use Nikon microscopes, i.e. more hands on, push that button to do this… * Some more general videos aimed at educating people, regardless of which microscope they use: * Bleedthrough: what it is, how to evaluate it and what to do about it. Note: the document mentioned in the video can be downloaded from the same page, just above the links to the videos. * Image analysis, demonstrated using Nikon General Analysis 1 but the principle apply to any software * Saturation, underexposure and bit depth * Several short tips video like a simple technique to find your sample without bleaching, how to clean coverslips, how to make a sample… Additionally, after we broadcasted our yearly microscopy course live a month ago (list of topics found by downloading the schedule from here<https://ki.se/en/bionut/microscopy-course>), many people followed online over the 9 days of the course and later asked for me to share the recordings. We are currently cleaning (re-recording) the sound of the videos then we will publish all of them on our youtube channel<https://www.youtube.com/channel/UCOSxiEG27pQjvOcl_-E4aRA> within a week or two (subscribe to get know when it happens). Finally I am helping out at the ELMI meeting<https://elmi2020.eu/> this year. We are planning a session about the video/written teaching material about microscopy that is already available online. So tips like the links that others shared when answering to you are very helpful. Med vänlig hälsning / Best regards Sylvie @@@@@@@@@@@@@@@@@@@@@@@@ Sylvie Le Guyader, PhD Live Cell Imaging Facility Manager Karolinska Institutet- Bionut Hälsovägen 7C, Room 7362 (lab)/7840 (office) 14157 Huddinge, Sweden mobile: +46 (0) 73 733 5008 LCI website Sign in to follow our microscopy blog! -----Original Message----- From: Confocal Microscopy List <[hidden email]> On Behalf Of Ted Usdin Sent: 24 March 2020 13:49 To: [hidden email] Subject: online tutorials? ***** To join, leave or search the confocal microscopy listserv, go to: https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Flists.umn.edu%2Fcgi-bin%2Fwa%3FA0%3Dconfocalmicroscopy&data=02%7C01%7Csylvie.le.guyader%40KI.SE%7Cd38fab724be54cbf6d3008d7cff1e284%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637206510113306845&sdata=6x%2B03jQyEbzVWPcZ%2BK%2BCQoX02ve5%2Bb069dxRdh66%2FQ8%3D&reserved=0 Post images on https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.imgur.com&data=02%7C01%7Csylvie.le.guyader%40KI.SE%7Cd38fab724be54cbf6d3008d7cff1e284%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637206510113306845&sdata=%2FCcUhIwokKrSZHU4v3lccIfz8y9o9AdZDmSso38f1HQ%3D&reserved=0 and include the link in your posting. ***** Hello, I am looking for online training material in microscopy, image processing, and image analysis that I can recommend. I am aware of the great material at ibiology.org. Does anyone know of additional material that steps a student through the information, potentially with questions to help them focus and test themselves or training material for image processing? Thank you. Stay safe and sane. Ted När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifter<https://ki.se/medarbetare/integritetsskyddspolicy>. Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data here<https://ki.se/en/staff/data-protection-policy>. |
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*****
To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** The MicroList has a bunch of resources <https://www.microlist.org/explore/?type=career&sort=a-z> bookmarked- people are also posting stuff on image.sc ! On Tue, Mar 24, 2020 at 1:06 PM Sylvie Le Guyader <[hidden email]> wrote: > ***** > To join, leave or search the confocal microscopy listserv, go to: > http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy > Post images on http://www.imgur.com and include the link in your posting. > ***** > > Hi Ted and others > > > > We, at the Live Cell Imaging facility in Sweden have produced a few videos > over the years. You can find them on our website< > https://ki.se/en/bionut/teaching-material>. > > There are 2 types: > > * Some that are directly targeted at training our users to use Nikon > microscopes, i.e. more hands on, push that button to do this… > * Some more general videos aimed at educating people, regardless of > which microscope they use: > * Bleedthrough: what it is, how to evaluate it and what to do about > it. Note: the document mentioned in the video can be downloaded from the > same page, just above the links to the videos. > * Image analysis, demonstrated using Nikon General Analysis 1 but > the principle apply to any software > * Saturation, underexposure and bit depth > * Several short tips video like a simple technique to find your > sample without bleaching, how to clean coverslips, how to make a sample… > > > > Additionally, after we broadcasted our yearly microscopy course live a > month ago (list of topics found by downloading the schedule from here< > https://ki.se/en/bionut/microscopy-course>), many people followed online > over the 9 days of the course and later asked for me to share the > recordings. > > We are currently cleaning (re-recording) the sound of the videos then we > will publish all of them on our youtube channel< > https://www.youtube.com/channel/UCOSxiEG27pQjvOcl_-E4aRA> within a week > or two (subscribe to get know when it happens). > > > > Finally I am helping out at the ELMI meeting<https://elmi2020.eu/> this > year. We are planning a session about the video/written teaching material > about microscopy that is already available online. So tips like the links > that others shared when answering to you are very helpful. > > > > Med vänlig hälsning / Best regards > > > > Sylvie > > > > @@@@@@@@@@@@@@@@@@@@@@@@ > > Sylvie Le Guyader, PhD > > Live Cell Imaging Facility Manager > > > > Karolinska Institutet- Bionut > > Hälsovägen 7C, > > Room 7362 (lab)/7840 (office) > > 14157 Huddinge, Sweden > > mobile: +46 (0) 73 733 5008 > > LCI website > > Sign in to follow our microscopy blog! > > > > -----Original Message----- > From: Confocal Microscopy List <[hidden email]> On > Behalf Of Ted Usdin > Sent: 24 March 2020 13:49 > To: [hidden email] > Subject: online tutorials? > > > > ***** > > To join, leave or search the confocal microscopy listserv, go to: > > > https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Flists.umn.edu%2Fcgi-bin%2Fwa%3FA0%3Dconfocalmicroscopy&data=02%7C01%7Csylvie.le.guyader%40KI.SE%7Cd38fab724be54cbf6d3008d7cff1e284%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637206510113306845&sdata=6x%2B03jQyEbzVWPcZ%2BK%2BCQoX02ve5%2Bb069dxRdh66%2FQ8%3D&reserved=0 > > Post images on > https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.imgur.com&data=02%7C01%7Csylvie.le.guyader%40KI.SE%7Cd38fab724be54cbf6d3008d7cff1e284%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637206510113306845&sdata=%2FCcUhIwokKrSZHU4v3lccIfz8y9o9AdZDmSso38f1HQ%3D&reserved=0 > and include the link in your posting. > > ***** > > > > Hello, > > > > I am looking for online training material in microscopy, image processing, > and image analysis that I can recommend. I am aware of the great material > at ibiology.org. Does anyone know of additional material that steps a > student through the information, potentially with questions to help them > focus and test themselves or training material for image processing? > > > > Thank you. Stay safe and sane. > > > > Ted > > > > När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI > kommer att behandla dina personuppgifter. Här finns information om hur KI > behandlar personuppgifter< > https://ki.se/medarbetare/integritetsskyddspolicy>. > > > Sending email to Karolinska Institutet (KI) will result in KI processing > your personal data. You can read more about KI’s processing of personal > data here<https://ki.se/en/staff/data-protection-policy>. > -- Beth Cimini, PhD Computational Biologist, Imaging Platform Broad Institute 415 Main St Room 5011 Cambridge, MA 02142 Current office number- (617) 714-8189 Pronouns - She/her/hers I will sometimes send or respond to emails outside of my local office hours, but I never expect responses outside of your local office hours. |
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*****
To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** I would like to say thank you to the confocal microscopy community! These online resources will be tremendous helpful to my students in this situation as well. Hope everyone stay safe and healthy! We will support each other online. Tingting Gu Ph.D. OMS, President University of Oklahoma Samuel Roberts Noble Microscopy Laboratory Department of Biology Norman, OK, 73019 405-325-4391 ________________________________ From: Confocal Microscopy List <[hidden email]> on behalf of Beth Cimini <[hidden email]> Sent: Tuesday, March 24, 2020 12:11 PM To: [hidden email] <[hidden email]> Subject: Re: online tutorials? ***** To join, leave or search the confocal microscopy listserv, go to: http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy Post images on http://www.imgur.com and include the link in your posting. ***** The MicroList has a bunch of resources <https://www.microlist.org/explore/?type=career&sort=a-z> bookmarked- people are also posting stuff on image.sc ! On Tue, Mar 24, 2020 at 1:06 PM Sylvie Le Guyader <[hidden email]> wrote: > ***** > To join, leave or search the confocal microscopy listserv, go to: > http://lists.umn.edu/cgi-bin/wa?A0=confocalmicroscopy > Post images on http://www.imgur.com and include the link in your posting. > ***** > > Hi Ted and others > > > > We, at the Live Cell Imaging facility in Sweden have produced a few videos > over the years. You can find them on our website< > https://ki.se/en/bionut/teaching-material>. > > There are 2 types: > > * Some that are directly targeted at training our users to use Nikon > microscopes, i.e. more hands on, push that button to do this… > * Some more general videos aimed at educating people, regardless of > which microscope they use: > * Bleedthrough: what it is, how to evaluate it and what to do about > it. Note: the document mentioned in the video can be downloaded from the > same page, just above the links to the videos. > * Image analysis, demonstrated using Nikon General Analysis 1 but > the principle apply to any software > * Saturation, underexposure and bit depth > * Several short tips video like a simple technique to find your > sample without bleaching, how to clean coverslips, how to make a sample… > > > > Additionally, after we broadcasted our yearly microscopy course live a > month ago (list of topics found by downloading the schedule from here< > https://ki.se/en/bionut/microscopy-course>), many people followed online > over the 9 days of the course and later asked for me to share the > recordings. > > We are currently cleaning (re-recording) the sound of the videos then we > will publish all of them on our youtube channel< > https://www.youtube.com/channel/UCOSxiEG27pQjvOcl_-E4aRA> within a week > or two (subscribe to get know when it happens). > > > > Finally I am helping out at the ELMI meeting<https://elmi2020.eu/> this > year. We are planning a session about the video/written teaching material > about microscopy that is already available online. So tips like the links > that others shared when answering to you are very helpful. > > > > Med vänlig hälsning / Best regards > > > > Sylvie > > > > @@@@@@@@@@@@@@@@@@@@@@@@ > > Sylvie Le Guyader, PhD > > Live Cell Imaging Facility Manager > > > > Karolinska Institutet- Bionut > > Hälsovägen 7C, > > Room 7362 (lab)/7840 (office) > > 14157 Huddinge, Sweden > > mobile: +46 (0) 73 733 5008 > > LCI website > > Sign in to follow our microscopy blog! > > > > -----Original Message----- > From: Confocal Microscopy List <[hidden email]> On > Behalf Of Ted Usdin > Sent: 24 March 2020 13:49 > To: [hidden email] > Subject: online tutorials? > > > > ***** > > To join, leave or search the confocal microscopy listserv, go to: > > > https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Flists.umn.edu%2Fcgi-bin%2Fwa%3FA0%3Dconfocalmicroscopy&data=02%7C01%7Csylvie.le.guyader%40KI.SE%7Cd38fab724be54cbf6d3008d7cff1e284%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637206510113306845&sdata=6x%2B03jQyEbzVWPcZ%2BK%2BCQoX02ve5%2Bb069dxRdh66%2FQ8%3D&reserved=0 > > Post images on > https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.imgur.com&data=02%7C01%7Csylvie.le.guyader%40KI.SE%7Cd38fab724be54cbf6d3008d7cff1e284%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C637206510113306845&sdata=%2FCcUhIwokKrSZHU4v3lccIfz8y9o9AdZDmSso38f1HQ%3D&reserved=0 > and include the link in your posting. > > ***** > > > > Hello, > > > > I am looking for online training material in microscopy, image processing, > and image analysis that I can recommend. I am aware of the great material > at ibiology.org. Does anyone know of additional material that steps a > student through the information, potentially with questions to help them > focus and test themselves or training material for image processing? > > > > Thank you. Stay safe and sane. > > > > Ted > > > > När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI > kommer att behandla dina personuppgifter. Här finns information om hur KI > behandlar personuppgifter< > https://ki.se/medarbetare/integritetsskyddspolicy>. > > > Sending email to Karolinska Institutet (KI) will result in KI processing > your personal data. You can read more about KI’s processing of personal > data here<https://ki.se/en/staff/data-protection-policy>. > -- Beth Cimini, PhD Computational Biologist, Imaging Platform Broad Institute 415 Main St Room 5011 Cambridge, MA 02142 Current office number- (617) 714-8189 Pronouns - She/her/hers I will sometimes send or respond to emails outside of my local office hours, but I never expect responses outside of your local office hours. |
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